List of works - Jiarui Ding

A novel approach to denoising ion trap tandem mass spectra

scientific article published on 17 March 2009

A robust hidden semi-Markov model with application to aCGH data processing

scientific article

An RCOR1 loss-associated gene expression signature identifies a prognostically significant DLBCL subgroup

scientific article

An adaptive approach to denoising tandem mass spectra ⬇️

scientific article published on September 7, 2011

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

scientific article published on 27 April 2020

BRCA1 and BRCA2 mutations correlate with TP53 abnormalities and presence of immune cell infiltrates in ovarian high-grade serous carcinoma.

scientific article published on 27 January 2012

Charge state determination of peptide tandem mass spectra using support vector machine (SVM).

scientific article

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

scientific article published on 20 October 2020

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.

scientific article

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces ⬇️

journal article from 'bioRxiv' published in 2019

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

scientific article

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling

scientific article published on September 2013

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

scientific article published on 22 December 2012

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data

scientific article

Identification of the epigenetic reader CBX2 as a potential drug target in advanced prostate cancer

scientific article published on 12 February 2016

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

scientific article

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

scientific article

Intratumoral heterogeneity in a minority of ovarian low-grade serous carcinomas

scientific article

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

scientific article

Model based clustering for tandem mass spectrum quality assessment

scientific article published in January 2009

Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors

scientific article

Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing

scientific article published on 22 May 2013

Ovarian and endometrial endometrioid carcinomas have distinct CTNNB1 and PTEN mutation profiles

scientific article

SVM-RFE based feature selection for tandem mass spectrum quality assessment

scientific article published in January 2011

Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma

scientific article published on 19 December 2019

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

scientific article

Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

scientific article published on 06 April 2020

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

scientific article

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

scientific article (publication date: 4 April 2012)

Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses

scientific article published on 01 October 2019

Use of mutation profiles to refine the classification of endometrial carcinomas.

scientific article published on 18 July 2012

densityCut: an efficient and versatile topological approach for automatic clustering of biological data

scientific article

List of works by Jiarui Ding

A novel approach to denoising ion trap tandem mass spectra

A robust hidden semi-Markov model with application to aCGH data processing

An RCOR1 loss-associated gene expression signature identifies a prognostically significant DLBCL subgroup

An adaptive approach to denoising tandem mass spectra ⬇️

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

BRCA1 and BRCA2 mutations correlate with TP53 abnormalities and presence of immune cell infiltrates in ovarian high-grade serous carcinoma.

Charge state determination of peptide tandem mass spectra using support vector machine (SVM).

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces ⬇️

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data

Identification of the epigenetic reader CBX2 as a potential drug target in advanced prostate cancer

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models.

Intratumoral heterogeneity in a minority of ovarian low-grade serous carcinomas

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

Model based clustering for tandem mass spectrum quality assessment

Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors

Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing

Ovarian and endometrial endometrioid carcinomas have distinct CTNNB1 and PTEN mutation profiles

SVM-RFE based feature selection for tandem mass spectrum quality assessment

Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses

Use of mutation profiles to refine the classification of endometrial carcinomas.

densityCut: an efficient and versatile topological approach for automatic clustering of biological data