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List of works by Marcos Pérez-Losada

27 - Longitudinal Sustained Microbiome Changes with Fecal Microbiota Transplantation in Children with Recurrent Clostridium Difficile Infection Revealed by Shotgun Metagenomic Sequencing

scholarly article published in May 2018

A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC

article

A Risky Business? Habitat and Social Behavior Impact Skin and Gut Microbiomes in Caribbean Cleaning Gobies

scientific article published on 09 April 2019

A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing

scientific article published on 06 February 2020

A single intravesical instillation of Lactobacillus rhamnosus GG is safe in children and adults with neuropathic bladder: A phase Ia clinical trial

scientific article published on 17 May 2019

Aegla chilota, new species of anomuran freshwater crab from Chiloé Island, western Patagonia

Altered Middle Ear Microbiome in Children With Chronic Otitis Media With Effusion and Respiratory Illnesses

scientific article published on 04 October 2019

An earthworm riddle: systematics and phylogeography of the Spanish lumbricid Postandrilus

scientific article (publication date: 2011)

Assessing the conservation status of the land snail Oreohelix peripherica wasatchensis (Family Oreohelicidae)

Author Correction: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing

scientific article published on 22 April 2020

Bacterial Signatures of Paediatric Respiratory Disease: An Individual Participant Data Meta-Analysis

scientific article published on 23 December 2021

Bacterial succession and functional diversity during vermicomposting of the white grape marc Vitis vinifera v. Albariño

scientific article published on 16 May 2019

Changes in the composition and function of bacterial communities during vermicomposting may explain beneficial properties of vermicompost

scientific article published on 04 July 2019

Characterization of HIV diversity, phylodynamics and drug resistance in Washington, DC.

scientific article published on 29 September 2017

Characterization of mucoid and serous middle ear effusions from patients with chronic otitis media: implication of different biological mechanisms?

scientific article published on 28 May 2018

Characterization of the bacterial communities of casts from Eisenia andrei fed with different substrates

scientific article published in 2016

Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle <i>Pollicipes pollicipes</i>

scientific article published on 12 March 2022

Comparing phylogenetic codivergence between polyomaviruses and their hosts

scientific article

Composition, Structure and Diversity of Soil Bacterial Communities before, during and after Transit through the Gut of the Earthworm <i>Aporrectodea caliginosa</i>

scientific article published on 13 May 2022

Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls

scientific article

Conflicting evolutionary patterns due to mitochondrial introgression and multilocus phylogeography of the Patagonian freshwater crab Aegla neuquensis

scientific article

Corrigendum: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC

scientific article published on 12 November 2019

Cypris morphology in the barnaclesIblaandParalepas(Crustacea: Cirripedia Thoracica) implications for cirripede evolution

scientific article published in 2009

DNA barcoding of earthworms (Eisenia fetida/andrei complex) from 28 ecotoxicological test laboratories

scholarly article by Jörg Römbke et al published August 2016 in Applied Soil Ecology

Deep phylogeny and character evolution in Thecostraca (Crustacea: Maxillopoda).

scientific article published on 24 April 2012

Different processes lead to similar patterns: a test of codivergence and the role of sea level and climate changes in shaping a southern temperate freshwater assemblage

scientific article

Disease progression and evolution of the HIV-1 env gene in 24 infected infants

scientific article published in November 2007

Distinguishing importation from diversification of quinolone-resistant Neisseria gonorrhoeae by molecular evolutionary analysis

scientific article

Diversity, structure and sources of bacterial communities in earthworm cocoons

scientific article published on 26 April 2018

Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma

scientific article published on 30 June 2015

Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge

scientific article published on 30 July 2021

Effects of aging on the skin and gill microbiota of farmed seabass and seabream

scientific article published on 12 January 2021

Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax)

scientific article published on 12 December 2019

Epidemiological and Evolutionary Dynamics of Pathogens

article

Epidemiological associations with genomic variation in SARS-CoV-2

scientific article published on 26 November 2021

Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

scientific article

Evaluation of computational methods for human microbiome analysis using simulated data

scientific article published on 11 August 2020

Evaluation of haplotype callers for next-generation sequencing of viruses

scientific article published on 06 March 2020

Evolution of Afrotropical freshwater crab lineages obscured by morphological convergence

scientific article

Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression

scientific article published on 27 April 2021

Fecal Transplant in Children With Clostridioides difficile Gives Sustained Reduction in Antimicrobial Resistance and Potential Pathogen Burden

scientific article published on 26 August 2019

Feeding on microbiomes: effects of detritivory on the taxonomic and phylogenetic bacterial composition of animal manures.

scientific article published on October 2015

Genetic diversity and molecular epidemiology of HIV transmission

article

Geographical isolation and restricted gene flow drive speciation of Aegla singularis (Decapoda: Anomura: Aeglidae) in southern South America

scholarly article

Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater

Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater

Glucocorticoids modulate gastrointestinal microbiome in a wild bird.

scientific article

Gondwanan radiation of the Southern Hemisphere crayfishes (Decapoda: Parastacidae): evidence from fossils and molecules

article

HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intra-Host Viral Populations

scientific article published on 26 December 2020

HIV-1 infected monozygotic twins: a tale of two outcomes

scientific article

High-throughput sequencing (HTS) for the analysis of viral populations

scientific article published on 27 January 2020

Host taxonomy determines the composition, structure, and diversity of the earthworm cast microbiome under homogenous feeding conditions

scientific article published in 2022

Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival

scientific article published on 28 August 2020

Identification of in the urine of an individual with spinal cord injury and augmentation cystoplasty using 16S sequencing: copathogen or innocent bystander?

In infants with severe bronchiolitis: dual-transcriptomic profiling of nasopharyngeal microbiome and host response

scientific article published on 06 January 2020

Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada

scientific article published on 13 August 2012

Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

scientific article published on 16 August 2015

Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial

scientific article

Looks can be deceiving: species delimitation reveals hidden diversity in the freshwater crab Aegla longirostri (Decapoda: Anomura)

scientific article published in 2017

Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology

scientific article published on 7 April 2016

Methods for Analyzing Viral Evolution

Microbial diversity within the airway microbiome in chronic pediatric lung diseases

scientific article

Microbial sequence typing in the genomic era.

scientific article published on 21 September 2017

Microbiome dynamics during cast ageing in the earthworm Aporrectodea caliginosa

scholarly article

Model-based multi-locus estimation of decapod phylogeny and divergence times

scientific article

Molecular phylogenetic analysis of the coccidian cephalopod parasites Aggregata octopiana and Aggregata eberthi (Apicomplexa: Aggregatidae) from the NE Atlantic coast using 18S rRNA sequences ⬇️

scientific article published on March 13, 2013

Molecular phylogenetics for conservation biology

scholarly article

Molecular phylogeny and character evolution of the chthamaloid barnacles (Cirripedia: Thoracica).

scientific article published on 19 June 2012

Molecular phylogeny, systematics and morphological evolution of the acorn barnacles (Thoracica: Sessilia: Balanomorpha).

scientific article

Molecular systematics and biogeography of the southern South american freshwater "crabs" Aegla (decapoda: Anomura: Aeglidae) using multiple heuristic tree search approaches

scientific article published in October 2004

Multigene phylogeny reveals a new Iranian earthworm genus (Lumbricidae: Philomontanus) with three new species

scientific article published in PLoS ONE

Multigene phylogeny reveals two new isolated and relic earthworm genera (Oligochaeta: Lumbricidae)

scholarly article by Jorge Domínguez et al published 3 July 2017 in Zoological Journal of the Linnean Society

Multilocus Sequence Typing of Pathogens

Mutation and recombination in pathogen evolution: Relevance, methods and controversies.

scientific article published on 22 September 2017

Nasal Bacteriomes of Patients with Asthma and Allergic Rhinitis Show Unique Composition, Structure, Function and Interactions

scientific article published in 2023

Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma

scientific article

Nasopharyngeal microbiome in premature infants and stability during rhinovirus infection

scientific article published on 31 March 2017

New Species and New Records of Endemic Freshwater Crabs from the Atlantic Forest in Southern Brazil (Anomura: Aeglidae)

article

New methods for inferring population dynamics from microbial sequences

scientific article

New species and records of the genus Aegla Leach, 1820 (Crustacea, Anomura, Aeglidae) from the West-Central region of Rio Grande do Sul, Brazil

article

PHYLOGENETIC POSITION OF THE FRESHWATER ANOMURAN FAMILY AEGLIDAE

scientific article (publication date: August 2002)

Pathogen typing in the genomics era: MLST and the future of molecular epidemiology

scientific article published on 26 January 2013

Pediatric asthma comprises different phenotypic clusters with unique nasal microbiotas

scientific article published on 04 October 2018

Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand

scientific article

Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America

scientific article published on 28 October 2009

Phylogenetic Position of the Freshwater Anomuran Family Aeglidae

scholarly article by Marcos Pérez-Losada et al published 1 January 2002 in Journal of Crustacean Biology

Phylogenetic Relationships among the Species of Aegla (Anomura: Aeglidae) Freshwater Crabs from Chile

article

Phylogenetic analysis of apicomplexan parasites infecting commercially valuable species from the North-East Atlantic reveals high levels of diversity and insights into the evolution of the group

scientific article published on 25 January 2018

Phylogenetic assessment of the earthworm Aporrectodea caliginosa species complex (Oligochaeta: Lumbricidae) based on mitochondrial and nuclear DNA sequences

scientific article

Phylogenetic species delimitation of the earthworms Eisenia fetida (Savigny, 1826) and Eisenia andrei Bouché, 1972 (Oligochaeta, Lumbricidae) based on mitochondrial and nuclear DNA sequences

Phylogenomics and molecular evolution of polyomaviruses

scientific article

Phylogeny and biogeography of the freshwater crayfish Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA.

scientific article published in October 2005

Phylogeography reveals complex historical processes and different evolutionarily significant units in Aegla scamosa freshwater crabs

scientific article published in 2023

Phylogeography reveals unexpectedly low genetic diversity in a widely distributed species: the case of the freshwater crab Aegla platensis (Decapoda: Anomura)

Pleistocene glaciation leaves deep signature on the freshwater crab Aegla alacalufi in Chilean Patagonia

scientific article

Population dynamics of Neisseria gonorrhoeae in Shanghai, China: a comparative study

scientific article

Population genetics of Neisseria gonorrhoeae in a high-prevalence community using a hypervariable outer membrane porB and 13 slowly evolving housekeeping genes

scientific article published on 8 June 2005

Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data

scientific article

Proteomic Characterization of Middle Ear Fluid Confirms Neutrophil Extracellular Traps as a Predominant Innate Immune Response in Chronic Otitis Media

scientific article

REANALYSIS OF THE RELATIONSHIPS AMONG THE CIRRIPEDIA AND THE ASCOTHORACIDA AND THE PHYLOGENETIC POSITION OF THE FACETOTECTA (MAXILLOPODA: THECOSTRACA) USING 18S rDNA SEQUENCES

scholarly article by Marcos Pérez-Losada et al published August 2002 in Journal of Crustacean Biology

RSV vs. rhinovirus bronchiolitis: difference in nasal airway microRNA profiles and NFκB signaling.

scientific article published on 15 December 2017

Rapid Bacterial Community Changes during Vermicomposting of Grape Marc Derived from Red Winemaking

scientific article published on 19 October 2019

Recombination in viruses: mechanisms, methods of study, and evolutionary consequences.

scientific article published on 23 December 2014

Redefining Healthy Urine: A Cross-Sectional Exploratory Metagenomic Study of People With and Without Bladder Dysfunction.

scientific article published on 22 January 2016

Relationship of the Middle Ear Effusion Microbiome to Secretory Mucin Production in Pediatric Patients With Chronic Otitis Media

scientific article published on 23 December 2016

Remarkable convergent evolution in specialized parasitic Thecostraca (Crustacea)

scientific article

Seminal Simian Immunodeficiency Virus in Chronically Infected Cynomolgus Macaques Is Dominated by Virus Originating from Multiple Genital Organs

scientific article published on 29 June 2018

Single-molecule long-read 16S sequencing to characterize the lung microbiome from mechanically ventilated patients with suspected pneumonia

scientific article

Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

scientific article published on 30 September 2019

Template:Chan et al., 2021 ⬇️

scientific article published in November 2021

Temporal Dynamics of Bacterial Communities in a Pilot-Scale Vermireactor Fed with Distilled Grape Marc

scientific article published on 28 April 2020

Temporal trends in gonococcal population genetics in a high prevalence urban community

scientific article published on December 2006

Testing hypotheses of population structuring in the Northeast Atlantic Ocean and Mediterranean Sea using the common cuttlefish Sepia officinalis

scientific article

The Origin, Epidemiology, and Phylodynamics of Human Immunodeficiency Virus Type 1 CRF47_BF

scientific article published on 01 January 2022

The Urine Microbiome of Healthy Men and Women Differs by Urine Collection Method

scientific article published on 31 March 2020

The evolution of HIV: inferences using phylogenetics

scientific article published on 27 November 2011

The tempo and mode of barnacle evolution

scientific article

The temporal dynamics of the tracheal microbiome in tracheostomised patients with and without lower respiratory infections.

scientific article published on 10 August 2017

Three new species of Aegla (Anomura) freshwater crabs from the upper Uruguay River hydrographic basin in Brazil

article

Three new species of Aeglidae ( AeglaLeach, 1820) from Paraná State, Brazil

article

Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution

scientific article published on 16 August 2019

Tracheal Microbiota in Patients With a Tracheostomy Before, During and After an Acute Respiratory Infection

scientific article published on 01 November 2018

Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children

scientific article

Underground evolution: new roots for the old tree of lumbricid earthworms

scientific article

Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches

scientific article

Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses

scientific article published on 14 July 2020

Validation of publicly-available software used in analyzing NGS data for HIV-1 drug resistance mutations and transmission networks in a Washington, DC, Cohort

article

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