List of works - Howard Ochman

A Genome-Wide Assay Specifies Only GreA as a Transcription Fidelity Factor in Escherichia coli.

scientific article

Assessing the Unseen Bacterial Diversity in Microbial Communities

scientific article published on 27 November 2015

Biological species in the viral world.

scientific article

Causes and consequences of genome expansion in fungi

scientific article published on 24 November 2011

Chimpanzees and humans harbour compositionally similar gut enterotypes

scientific article

Comparative metagenomics and population dynamics of the gut microbiota in mother and infant

scientific article

Cospeciation of gut microbiota with hominids

scientific article

Deletional bias across the three domains of life.

scientific article

Enterotypes in the landscape of gut microbial community composition.

scientific article published on 18 December 2017

Evolutionary and ecological consequences of gut microbial communities

scientific article published on 29 August 2019

Evolutionary origins of genomic repertoires in bacteria

scientific article

Evolutionary relationships of wild hominids recapitulated by gut microbial communities

scientific article

Examining bacterial species under the specter of gene transfer and exchange

scientific article

Extracting single genomes from heterogenous DNA samples: a test case with Carsonella ruddii, the bacterial symbiont of psyllids (Insecta).

scientific article

Eyeing bacterial genomes ⬇️

scientific article published on April 1, 2003

Genome rearrangements can make and break small RNA genes

scientific article

Genome-wide detection of novel regulatory RNAs in E. coli

scientific article

Genomes on the shrink

scientific article

Illumina-based analysis of microbial community diversity ⬇️

scientific article published on June 16, 2011

Impermanence of bacterial clones

scientific article published in July 2015

Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria

scientific article (publication date: 29 September 2009)

Intracellular symbionts of sharpshooters (Insecta: Hemiptera: Cicadellinae) form a distinct clade with a small genome

scientific article

Isochores result from mutation not selection

scientific article

Lateral gene transfer and the nature of bacterial innovation

scientific article

Microbiomes are true to type

scientific article

Neutral mutations and neutral substitutions in bacterial genomes

scientific article

Of what use is sex to bacteria?

scientific article

Phylogenetics and the cohesion of bacterial genomes

scientific article

Publisher Correction: Enterotypes in the landscape of gut microbial community composition

scientific article published on 13 February 2018

Rapid changes in the gut microbiome during human evolution

scientific article

Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes

scientific article

Rates of gut microbiome divergence in mammals

scientific article

Recognizing the pseudogenes in bacterial genomes

scientific article

Recombination events are concentrated in the spike protein region of Betacoronaviruses

scientific article published on 17 December 2020

Resurrection of a global, metagenomically defined gokushovirus

scientific article published on 26 February 2020

SIV-induced instability of the chimpanzee gut microbiome

scientific article

Sequence Conservation and Functional Constraint on Intergenic Spacers in Reduced Genomes of the Obligate Symbiont Buchnera ⬇️

scientific article published on September 1, 2011

Sex and virulence in Escherichia coli: an evolutionary perspective

scientific article (publication date: June 2006)

Short-term signatures of evolutionary change in the Salmonella enterica serovar typhimurium 14028 genome ⬇️

scientific article

Social behavior shapes the chimpanzee pan-microbiome.

scientific article published on 15 January 2016

Stability of the gorilla microbiome despite simian immunodeficiency virus infection

scientific article

Start-up entities in the origin of new genes

scientific article

Stepwise formation of the bacterial flagellar system

scientific article

Structural features and the persistence of acquired proteins

scientific article

Sympatric chimpanzees and gorillas harbor convergent gut microbial communities

scientific article (publication date: October 2013)

The Evolution of Bacterial Genome Architecture

scientific article

The consequences of genetic drift for bacterial genome complexity

scientific article

The emergence and fate of horizontally acquired genes in Escherichia coli

scientific article

The extinction dynamics of bacterial pseudogenes.

scientific article

The nature and dynamics of bacterial genomes.

scientific article

The players in a mutualistic symbiosis: insects, bacteria, viruses, and virulence genes

scientific article

Type III secretion systems and the evolution of mutualistic endosymbiosis

scientific article

Where next for microbiome research?

scientific article

List of works by Howard Ochman

A Genome-Wide Assay Specifies Only GreA as a Transcription Fidelity Factor in Escherichia coli.

Assessing the Unseen Bacterial Diversity in Microbial Communities

Biological species in the viral world.

Causes and consequences of genome expansion in fungi

Chimpanzees and humans harbour compositionally similar gut enterotypes

Comparative metagenomics and population dynamics of the gut microbiota in mother and infant

Cospeciation of gut microbiota with hominids

Deletional bias across the three domains of life.

Enterotypes in the landscape of gut microbial community composition.

Evolutionary and ecological consequences of gut microbial communities

Evolutionary origins of genomic repertoires in bacteria

Evolutionary relationships of wild hominids recapitulated by gut microbial communities

Examining bacterial species under the specter of gene transfer and exchange

Extracting single genomes from heterogenous DNA samples: a test case with Carsonella ruddii, the bacterial symbiont of psyllids (Insecta).

Eyeing bacterial genomes ⬇️

Genome rearrangements can make and break small RNA genes

Genome-wide detection of novel regulatory RNAs in E. coli

Genomes on the shrink

Illumina-based analysis of microbial community diversity ⬇️

Impermanence of bacterial clones

Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria

Intracellular symbionts of sharpshooters (Insecta: Hemiptera: Cicadellinae) form a distinct clade with a small genome

Isochores result from mutation not selection

Lateral gene transfer and the nature of bacterial innovation

Microbiomes are true to type

Neutral mutations and neutral substitutions in bacterial genomes

Of what use is sex to bacteria?

Phylogenetics and the cohesion of bacterial genomes

Publisher Correction: Enterotypes in the landscape of gut microbial community composition

Rapid changes in the gut microbiome during human evolution

Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes

Rates of gut microbiome divergence in mammals

Recognizing the pseudogenes in bacterial genomes

Recombination events are concentrated in the spike protein region of Betacoronaviruses

Resurrection of a global, metagenomically defined gokushovirus

SIV-induced instability of the chimpanzee gut microbiome

Sequence Conservation and Functional Constraint on Intergenic Spacers in Reduced Genomes of the Obligate Symbiont Buchnera ⬇️

Sex and virulence in Escherichia coli: an evolutionary perspective

Short-term signatures of evolutionary change in the Salmonella enterica serovar typhimurium 14028 genome ⬇️

Social behavior shapes the chimpanzee pan-microbiome.

Stability of the gorilla microbiome despite simian immunodeficiency virus infection

Start-up entities in the origin of new genes

Stepwise formation of the bacterial flagellar system

Structural features and the persistence of acquired proteins

Sympatric chimpanzees and gorillas harbor convergent gut microbial communities

The Evolution of Bacterial Genome Architecture

The consequences of genetic drift for bacterial genome complexity

The emergence and fate of horizontally acquired genes in Escherichia coli

The extinction dynamics of bacterial pseudogenes.

The nature and dynamics of bacterial genomes.

The players in a mutualistic symbiosis: insects, bacteria, viruses, and virulence genes

Type III secretion systems and the evolution of mutualistic endosymbiosis

Where next for microbiome research?