List of works - Simone Sidoli

An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease

scientific article published on 28 September 2020

Analyses of Histone Proteoforms Using Front-end Electron Transfer Dissociation-enabled Orbitrap Instruments

scientific article

Assessment of Quantification Precision of Histone Post-Translational Modifications by Using an Ion Trap and down To 50 000 Cells as Starting Material.

scientific article published on 9 November 2017

Author Correction: An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease

scientific article published on 08 October 2020

Complete Workflow for Analysis of Histone Post-translational Modifications Using Bottom-up Mass Spectrometry: From Histone Extraction to Data Analysis

scientific article

Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function

scientific article published on 06 May 2020

Distinct Roles of Two Histone Methyltransferases in Transmitting H3K36me3-Based Epigenetic Memory Across Generations in

article

Domain-focused CRISPR screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells

scientific article published on 01 July 2018

EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data

scientific article published on 30 May 2018

EpiProfile Quantifies Histone Peptides With Modifications by Extracting Retention Time and Intensity in High-resolution Mass Spectra

scientific article published on 24 March 2015

Guide for protein fold change and p-value calculation for non-experts in proteomics

scientific article published on 24 September 2020

H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification

scientific article published on 03 January 2019

Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation

scientific article published on 17 October 2019

Identification of Nidogen 1 as a lung metastasis protein through secretome analysis

scientific article

Lysine 4 of histone H3.3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy

scientific article published on 05 March 2020

Middle-Down MS is Ready to Answer Complex Questions in Chromatin Biology

scientific article published on 07 June 2018

Multicellular Tumor Spheroids Combined with Mass Spectrometric Histone Analysis To Evaluate Epigenetic Drugs

scientific article

Mutant FOXL2C134W highjacks SMAD4 and SMAD2/3 to drive adult granulosa cell tumors

scientific article published on 08 July 2020

One minute analysis of 200 histone posttranslational modifications by direct injection mass spectrometry

scientific article published on 23 May 2019

PKC epsilon is a Key Regulator of Mitochondrial Redox Homeostasis in Acute Myeloid Leukemia

scientific article

Progress in epigenetic histone modification analysis by mass spectrometry for clinical investigations

scientific article

Properly reading the histone code by MS-based proteomics

scientific article published on 29 July 2015

Proteome-wide acetylation dynamics in human cells

scientific article published on 31 August 2017

Recent Achievements in Characterizing the Histone Code and Approaches to Integrating Epigenomics and Systems Biology

scientific article

Single Cell Proteomics by Data-Independent Acquisition To Study Embryonic Asymmetry in Xenopus laevis

scientific article published on 27 June 2019

Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation

scientific article published on 14 June 2016

Time-resolved Global and Chromatin Proteomics during Herpes Simplex Virus Type 1 (HSV-1) Infection

scientific article

Toxoplasma gondii PPM3C, a secreted protein phosphatase, affects parasitophorous vacuole effector export

scientific article published on 28 December 2020

VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms

scientific article published on 28 June 2021

Why proteomics is not the new genomics and the future of mass spectrometry in cell biology

scientific article published on 12 December 2016

List of works by Simone Sidoli

An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease

Analyses of Histone Proteoforms Using Front-end Electron Transfer Dissociation-enabled Orbitrap Instruments

Assessment of Quantification Precision of Histone Post-Translational Modifications by Using an Ion Trap and down To 50 000 Cells as Starting Material.

Author Correction: An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease

Complete Workflow for Analysis of Histone Post-translational Modifications Using Bottom-up Mass Spectrometry: From Histone Extraction to Data Analysis

Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function

Distinct Roles of Two Histone Methyltransferases in Transmitting H3K36me3-Based Epigenetic Memory Across Generations in

Domain-focused CRISPR screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells

EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data

EpiProfile Quantifies Histone Peptides With Modifications by Extracting Retention Time and Intensity in High-resolution Mass Spectra

Guide for protein fold change and p-value calculation for non-experts in proteomics

H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification

Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation

Identification of Nidogen 1 as a lung metastasis protein through secretome analysis

Lysine 4 of histone H3.3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy

Middle-Down MS is Ready to Answer Complex Questions in Chromatin Biology

Multicellular Tumor Spheroids Combined with Mass Spectrometric Histone Analysis To Evaluate Epigenetic Drugs

Mutant FOXL2C134W highjacks SMAD4 and SMAD2/3 to drive adult granulosa cell tumors

One minute analysis of 200 histone posttranslational modifications by direct injection mass spectrometry

PKC epsilon is a Key Regulator of Mitochondrial Redox Homeostasis in Acute Myeloid Leukemia

Progress in epigenetic histone modification analysis by mass spectrometry for clinical investigations

Properly reading the histone code by MS-based proteomics

Proteome-wide acetylation dynamics in human cells

Recent Achievements in Characterizing the Histone Code and Approaches to Integrating Epigenomics and Systems Biology

Single Cell Proteomics by Data-Independent Acquisition To Study Embryonic Asymmetry in Xenopus laevis

Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation

Time-resolved Global and Chromatin Proteomics during Herpes Simplex Virus Type 1 (HSV-1) Infection

Toxoplasma gondii PPM3C, a secreted protein phosphatase, affects parasitophorous vacuole effector export

VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms

Why proteomics is not the new genomics and the future of mass spectrometry in cell biology

Assessment of Quantification Precision of Histone Post-Translational Modifications by Using an Ion Trap and down To 50 000 Cells as Starting Material.