List of works - Sungroh Yoon

65‐2: A Light and Fast Branched Neural Network using Perceptual Optimization for High‐Quality Visual Restoration of UDC images

scientific article published on 28 June 2022

A clinicogenetic model to predict lymph node invasion by use of genome-based biomarkers from exome arrays in prostate cancer patients

scientific article

A genetic variant in SLC28A3, rs56350726, is associated with progression to castration-resistant prostate cancer in a Korean population with metastatic prostate cancer

scientific article

A robust peak detection method for RNA structure inference by high-throughput contact mapping

scientific article

An application of zero-suppressed binary decision diagrams to clustering analysis of DNA microarray data

scientific article

AnomiGAN: Generative Adversarial Networks for Anonymizing Private Medical Data

scientific article published on 01 January 2020

Application of maximin correlation analysis to classifying protein environments for function prediction

scientific article published on 16 August 2010

Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles

scientific article

Blood Pressure Prediction by a Smartphone Sensor using Fully Convolutional Networks

scientific article published on 01 July 2020

CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing

scientific article

Can the prostate risk calculator based on Western population be applied to Asian population?

scientific article published on 11 August 2011

Changes in Lesional and Non-lesional Skin Microbiome During Treatment of Atopic Dermatitis

scientific article published on 01 March 2019

Clustering protein environments for function prediction: finding PROSITE motifs in 3D

scientific article published on 22 May 2007

Co-clustering: a versatile tool for data analysis in biomedical informatics

scientific article

Comprehensive ensemble in QSAR prediction for drug discovery

scientific article published on 26 October 2019

Computational identification of microRNAs and their targets

scientific article published on June 2006

Constructing Accurate Contact Maps for Hydroxyl-Radical-Cleavage-Based High-Throughput RNA Structure Inference ⬇️

scientific article published on January 31, 2011

Correction to: HiComet: a high-throughput comet analysis tool for large-scale DNA damage assessment.

scientific article published on 11 May 2018

Correction: A genetic variant in SLC28A3, rs56350726, is associated with progression to castration-resistant prostate cancer in a Korean population with metastatic prostate cancer

DNA Steganalysis Using Deep Recurrent Neural Networks

scientific article published on 01 January 2019

DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing

scientific article published on 27 July 2017

Deduplication in SSDs: Model and quantitative analysis

Deep Recurrent Neural Network-Based Identification of Precursor microRNAs ⬇️

scientific article published in January 2017

Deep learning based low-cost high-accuracy diagnostic framework for dementia using comprehensive neuropsychological assessment profiles

scientific article published on 03 October 2018

Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity

scientific article published on 29 January 2018

Deep learning in bioinformatics

scientific article published on 29 July 2016 from Briefings in Bioinformatics

Development and External Validation of the Korean Prostate Cancer Risk Calculator for High-Grade Prostate Cancer: Comparison with Two Western Risk Calculators in an Asian Cohort

scientific article

Development and validation of a next-generation sequencing-based multigene assay to predict the prognosis of estrogen receptor-positive, HER2-negative breast cancer

scientific article published on 07 October 2020

Discovering coherent biclusters from gene expression data using zero-suppressed binary decision diagrams.

scientific article

E2V-SDE: From Asynchronous Events to Fast and Continuous Video Reconstruction via Neural Stochastic Differential Equations

scientific article published in June 2021

Electroencephalographic Resting-State Functional Connectivity of Benign Epilepsy with Centrotemporal Spikes

End-to-End Representation Learning for Chemical-Chemical Interaction Prediction

scientific article published on 07 August 2018

Enhanced pClustering and its applications to gene expression data

article

Ensemble learning can significantly improve human microRNA target prediction.

scientific article published in August 2014

Entropy-based analysis and bioinformatics-inspired integration of global economic information transfer

scientific article

Exome-based genome-wide association study and risk assessment using genetic risk score to prostate cancer in the Korean population

scientific article published on 24 March 2017

Exploiting binary abstractions in deciphering gene interactions

scientific article published in January 2006

Finding co-clusters of genes and clinical parameters

scientific article published on January 2005

GPU-based acceleration of an RNA tertiary structure prediction algorithm

scientific article published on 22 May 2013

Genetic risk score to predict biochemical recurrence after radical prostatectomy in prostate cancer: prospective cohort study

scientific article published on 26 May 2017

Genome-wide detection of allelic genetic variation to predict advanced-stage prostate cancer after radical prostatectomy using an exome SNP chip

scientific article published on 15 June 2015

Genome-wide detection of allelic genetic variation to predict biochemical recurrence after radical prostatectomy among prostate cancer patients using an exome SNP chip

scientific article published on 13 March 2015

Glow-TTS: A Generative Flow for Text-to-Speech via Monotonic Alignment Search ⬇️

Got target? Computational methods for microRNA target prediction and their extension

scientific article (publication date: 30 April 2010)

HiComet: a high-throughput comet analysis tool for large-scale DNA damage assessment

scientific article published on 19 February 2018

HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis

scientific article (publication date: July 2013)

HiTRACE: high-throughput robust analysis for capillary electrophoresis

scientific article published on 10 May 2011

High-throughput analysis of the activities of xCas9, SpCas9-NG and SpCas9 at matched and mismatched target sequences in human cells

scientific article published on 14 January 2020

How Generative Adversarial Networks and Their Variants Work

scholarly article

Imbalanced Data Classification via Cooperative Interaction Between Classifier and Generator

scientific article published in 2022

In-depth analysis of interrelation between quality scores and real errors in Illumina reads

scientific article published in January 2013

Initial Biopsy Outcome Prediction in Korean Patients-Comparison of a Noble Web-based Korean Prostate Cancer Risk Calculator versus Prostate-specific Antigen Testing ⬇️

scientific article published on December 22, 2010

Large-scale machine learning of media outlets for understanding public reactions to nation-wide viral infection outbreaks

scientific article

LncRNAnet: long non-coding RNA identification using deep learning

scientific article published on 01 November 2018

MP37-08 USING THE CLINICO-GENETIC MODEL FOR PREDICTING LYMPH NODE INVASION BY GENOME-BASED BIOMARKERS FROM EXOME ARRAY AMONG PROSTATE CANCER PATIENTS

scientific article published on 31 March 2015

MUGAN: Multi-GPU accelerated AmpliconNoise server for rapid microbial diversity assessment

scientific article published on 20 February 2018

Machine learning methods and systems for data-driven discovery in biomedical informatics.

scientific article published in October 2017

Machine learning-based identification of endogenous cellular microRNA sponges against viral microRNAs

scientific article

Macro and small over micro: macromolecules and small molecules that regulate microRNAs

scientific article

Massively parallel energy space exploration for uncluttered visualization of vascular structures

scientific article

Mining Gene Sets for Measuring Similarities

article

NanoFlow: Scalable Normalizing Flows with Sublinear Parameter Complexity ⬇️

scientific article published in November 2020

Neural Universal Discrete Denoiser ⬇️

scientific article published in January 2016

Nonlinear preprocessing method for detecting peaks from gas chromatograms

scientific article

Predicting the efficiency of prime editing guide RNAs in human cells

scientific article published on 21 September 2020

Prediction and Analysis of Human microRNA Regulatory Modules

scientific article published on January 2005

Prediction of pathologic femoral fractures in patients with lung cancer using machine learning algorithms: Comparison of computed tomography-based radiological features with clinical features versus without clinical features.

scientific article

Prediction of regulatory modules comprising microRNAs and target genes

scientific article

Prediction of the sequence-specific cleavage activity of Cas9 variants

scientific article published on 08 June 2020

RNA design rules from a massive open laboratory

scientific article

Robust classification of DNA damage patterns in single cell gel electrophoresis

scientific article published on 01 January 2013

Sequence-specific prediction of the efficiencies of adenine and cytosine base editors

scientific article published on 06 July 2020

SpCas9 activity prediction by DeepSpCas9, a deep learning-based model with high generalization performance

scientific article published on 06 November 2019

Standardization of RNA chemical mapping experiments

scientific article (publication date: 20 May 2014)

Support vector machine based classification of 3-dimensional protein physicochemical environments for automated function annotation ⬇️

scientific article published on October 14, 2010

The Message Passing Neural Networks for Chemical Property Prediction on SMILES

scientific article published on 20 May 2020

The use of exome genotyping to predict pathological Gleason score upgrade after radical prostatectomy in low-risk prostate cancer patients

scientific article

Training IBM Watson using Automatically Generated Question-Answer Pairs ⬇️

scientific article (publication date: 12 November 2016)

Transfer Learning for Deep Learning on Graph-Structured Data

scientific article published in 2017

Uncluttered Single-Image Visualization of Vascular Structures Using GPU and Integer Programming

scientific article

Will solid-state drives accelerate your bioinformatics? In-depth profiling, performance analysis and beyond

scientific article published on September 2015

hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Unit based on Homopolymer Compaction

scientific article published on 26 February 2016

vHoT: a database for predicting interspecies interactions between viral microRNA and host genomes ⬇️

scientific article published on December 8, 2011

List of works by Sungroh Yoon

65‐2: A Light and Fast Branched Neural Network using Perceptual Optimization for High‐Quality Visual Restoration of UDC images

A clinicogenetic model to predict lymph node invasion by use of genome-based biomarkers from exome arrays in prostate cancer patients

A genetic variant in SLC28A3, rs56350726, is associated with progression to castration-resistant prostate cancer in a Korean population with metastatic prostate cancer

A robust peak detection method for RNA structure inference by high-throughput contact mapping

An application of zero-suppressed binary decision diagrams to clustering analysis of DNA microarray data

AnomiGAN: Generative Adversarial Networks for Anonymizing Private Medical Data

Application of maximin correlation analysis to classifying protein environments for function prediction

Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles

Blood Pressure Prediction by a Smartphone Sensor using Fully Convolutional Networks

CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing

Can the prostate risk calculator based on Western population be applied to Asian population?

Changes in Lesional and Non-lesional Skin Microbiome During Treatment of Atopic Dermatitis

Clustering protein environments for function prediction: finding PROSITE motifs in 3D

Co-clustering: a versatile tool for data analysis in biomedical informatics

Comprehensive ensemble in QSAR prediction for drug discovery

Computational identification of microRNAs and their targets

Constructing Accurate Contact Maps for Hydroxyl-Radical-Cleavage-Based High-Throughput RNA Structure Inference ⬇️

Correction to: HiComet: a high-throughput comet analysis tool for large-scale DNA damage assessment.

Correction: A genetic variant in SLC28A3, rs56350726, is associated with progression to castration-resistant prostate cancer in a Korean population with metastatic prostate cancer

DNA Steganalysis Using Deep Recurrent Neural Networks

DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing

Deduplication in SSDs: Model and quantitative analysis

Deep Recurrent Neural Network-Based Identification of Precursor microRNAs ⬇️

Deep learning based low-cost high-accuracy diagnostic framework for dementia using comprehensive neuropsychological assessment profiles

Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity

Deep learning in bioinformatics

Development and External Validation of the Korean Prostate Cancer Risk Calculator for High-Grade Prostate Cancer: Comparison with Two Western Risk Calculators in an Asian Cohort

Development and validation of a next-generation sequencing-based multigene assay to predict the prognosis of estrogen receptor-positive, HER2-negative breast cancer

Discovering coherent biclusters from gene expression data using zero-suppressed binary decision diagrams.

E2V-SDE: From Asynchronous Events to Fast and Continuous Video Reconstruction via Neural Stochastic Differential Equations

Electroencephalographic Resting-State Functional Connectivity of Benign Epilepsy with Centrotemporal Spikes

End-to-End Representation Learning for Chemical-Chemical Interaction Prediction

Enhanced pClustering and its applications to gene expression data

Ensemble learning can significantly improve human microRNA target prediction.

Entropy-based analysis and bioinformatics-inspired integration of global economic information transfer

Exome-based genome-wide association study and risk assessment using genetic risk score to prostate cancer in the Korean population

Exploiting binary abstractions in deciphering gene interactions

Finding co-clusters of genes and clinical parameters

GPU-based acceleration of an RNA tertiary structure prediction algorithm

Genetic risk score to predict biochemical recurrence after radical prostatectomy in prostate cancer: prospective cohort study

Genome-wide detection of allelic genetic variation to predict advanced-stage prostate cancer after radical prostatectomy using an exome SNP chip

Genome-wide detection of allelic genetic variation to predict biochemical recurrence after radical prostatectomy among prostate cancer patients using an exome SNP chip

Glow-TTS: A Generative Flow for Text-to-Speech via Monotonic Alignment Search ⬇️

Got target? Computational methods for microRNA target prediction and their extension

HiComet: a high-throughput comet analysis tool for large-scale DNA damage assessment

HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis

HiTRACE: high-throughput robust analysis for capillary electrophoresis

High-throughput analysis of the activities of xCas9, SpCas9-NG and SpCas9 at matched and mismatched target sequences in human cells

How Generative Adversarial Networks and Their Variants Work

Imbalanced Data Classification via Cooperative Interaction Between Classifier and Generator

In-depth analysis of interrelation between quality scores and real errors in Illumina reads

Initial Biopsy Outcome Prediction in Korean Patients-Comparison of a Noble Web-based Korean Prostate Cancer Risk Calculator versus Prostate-specific Antigen Testing ⬇️

Large-scale machine learning of media outlets for understanding public reactions to nation-wide viral infection outbreaks

LncRNAnet: long non-coding RNA identification using deep learning

MP37-08 USING THE CLINICO-GENETIC MODEL FOR PREDICTING LYMPH NODE INVASION BY GENOME-BASED BIOMARKERS FROM EXOME ARRAY AMONG PROSTATE CANCER PATIENTS

MUGAN: Multi-GPU accelerated AmpliconNoise server for rapid microbial diversity assessment

Machine learning methods and systems for data-driven discovery in biomedical informatics.

Machine learning-based identification of endogenous cellular microRNA sponges against viral microRNAs

Macro and small over micro: macromolecules and small molecules that regulate microRNAs

Massively parallel energy space exploration for uncluttered visualization of vascular structures

Mining Gene Sets for Measuring Similarities

NanoFlow: Scalable Normalizing Flows with Sublinear Parameter Complexity ⬇️

Neural Universal Discrete Denoiser ⬇️

Nonlinear preprocessing method for detecting peaks from gas chromatograms

Predicting the efficiency of prime editing guide RNAs in human cells

Prediction and Analysis of Human microRNA Regulatory Modules

Prediction of pathologic femoral fractures in patients with lung cancer using machine learning algorithms: Comparison of computed tomography-based radiological features with clinical features versus without clinical features.

Prediction of regulatory modules comprising microRNAs and target genes

Prediction of the sequence-specific cleavage activity of Cas9 variants

RNA design rules from a massive open laboratory

Robust classification of DNA damage patterns in single cell gel electrophoresis

Sequence-specific prediction of the efficiencies of adenine and cytosine base editors

SpCas9 activity prediction by DeepSpCas9, a deep learning-based model with high generalization performance

Standardization of RNA chemical mapping experiments

Support vector machine based classification of 3-dimensional protein physicochemical environments for automated function annotation ⬇️

The Message Passing Neural Networks for Chemical Property Prediction on SMILES

The use of exome genotyping to predict pathological Gleason score upgrade after radical prostatectomy in low-risk prostate cancer patients

Training IBM Watson using Automatically Generated Question-Answer Pairs ⬇️

Transfer Learning for Deep Learning on Graph-Structured Data