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List of works by Benoit Nabholz

A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi

scientific article published on 23 March 2011

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.

scientific article published on 4 August 2016

Adaptive phenotypic and genomic divergence in the common chaffinch (Fringilla coelebs) following niche expansion within a small oceanic island

scientific article published in September 2023

An evolutionary genome scan for longevity-related natural selection in mammals

scientific article published on 2 December 2009

Avian Genomes Revisited: Hidden Genes Uncovered and the Rates versus Traits Paradox in Birds

scientific article published on 5 September 2017

Body mass-corrected molecular rate for bird mitochondrial DNA.

scientific article

Colonisation of subterranean ecosystems leads to larger genome in waterlouse (Aselloidea)

Demographic responses of oceanic island birds to local and regional ecological disruptions revealed by whole‐genome sequencing

scientific article published on 18 December 2023

Determination of mitochondrial genetic diversity in mammals

scientific article (publication date: 2008)

Dynamic evolution of base composition: causes and consequences in avian phylogenomics

scientific article (publication date: August 2011)

Evolutionary constraint in flanking regions of avian genes

scientific article published on 4 April 2011

Evolutionary forces affecting synonymous variations in plant genomes.

scientific article

Exon capture museomics deciphers the nine-banded armadillo species complex and identifies a new species endemic to the Guiana Shield

scientific article published on 22 June 2024

Gene expression, chromosome heterogeneity and the fast-X effect in mammals

scientific article published in February 2015

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination ⬇️

scientific article published on February 8, 2013

Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants

scientific article published on 13 January 2021

Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants

Hemizygosity Enhances Purifying Selection: Lack of Fast-Z Evolution in Two Satyrine Butterflies

scientific article published on September 2016

High Levels of Gene Expression Explain the Strong Evolutionary Constraint of Mitochondrial Protein-Coding Genes ⬇️

scientific article published on October 15, 2012

Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA.

scientific article published on 27 January 2018

Influence of Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds

scientific article published on 01 March 2019

Inverse relationship between longevity and evolutionary rate of mitochondrial proteins in mammals and birds

scientific article published on 24 December 2008

Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals

scientific article published on 06 April 2020

Island songbirds as windows into evolution in small populations

scientific article published on 20 January 2021

Kr/Kc but not dN/dS correlates positively with body mass in birds, raising implications for inferring lineage-specific selection

scientific article

Large Variation in the Ratio of Mitochondrial to Nuclear Mutation Rate across Animals: Implications for Genetic Diversity and the Use of Mitochondrial DNA as a Molecular Marker

scientific article

MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

scientific article published on 03 April 2020

Molecular evolution of genes in avian genomes

scientific article (publication date: 2010)

Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny

scientific article published on 25 June 2010

Overestimation of the adaptive substitution rate in fluctuating populations

scientific article published on 01 May 2018

Phylogenomic analyses data of the avian phylogenomics project

scientific article

Reconstructing the phylogenetic history of long-term effective population size and life-history traits using patterns of amino acid replacement in mitochondrial genomes of mammals and birds

scientific article (publication date: 2013)

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap

scientific article (publication date: April 2013)

Significant selective constraint at 4-fold degenerate sites in the avian genome and its consequence for detection of positive selection

scientific article

Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis

scientific article published on 12 November 2007

The bimodal distribution of genic GC content is ancestral to monocot species

scientific article

The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

scientific article (publication date: 10 March 2009)

The genome of a songbird

scientific article

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima).

scientific article published on 18 April 2014

Whole Genome Shotgun Phylogenomics Resolves the Pattern and Timing of Swallowtail Butterfly Evolution

scientific article published on 01 January 2020

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

Within-island diversification in a passerine bird

scientific article published on 18 March 2020

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