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List of works by Jay W Ponder

A physically grounded damped dispersion model with particle mesh Ewald summation

scientific article published on 01 August 2018

AMOEBA binding free energies for the SAMPL7 TrimerTrip host-guest challenge

scientific article published on 03 November 2020

Absolute binding free energies for the SAMPL6 cucurbit[8]uril host-guest challenge via the AMOEBA polarizable force field

scientific article published on 15 October 2018

Advanced Potential Energy Surfaces for Molecular Simulation

scientific article published on 11 August 2016

An optimized charge penetration model for use with the AMOEBA force field.

scientific article

Classical Pauli repulsion: An anisotropic, atomic multipole model

scientific article published on 01 February 2019

Implicit Solvents for the Polarizable Atomic Multipole AMOEBA Force Field

scientific article published on 26 March 2021

Polarizable Water Potential Derived from a Model Electron Density

scientific article published on 26 October 2021

Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model

scientific article published on 26 February 2015

Systematic improvement of a classical molecular model of water

scientific article published on 14 August 2013

TINKTEP: A fully self-consistent, mutually polarizable QM/MM approach based on the AMOEBA force field

scientific article published in September 2016

Tinker 8: Software Tools for Molecular Design

scientific article published on 19 September 2018

Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields Using GPUs and Multi-GPU Systems

scientific article published on 23 March 2021

Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields.

scientific article

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