List of works - James B Smadbeck

Acute leukemias harboring KMT2A/MLLT10 fusion: a 10-year experience from a single genomics laboratory

scientific article published on 19 March 2019

Copy number variant analysis using genome-wide mate-pair sequencing

scientific article published on 30 July 2018

Cryptic and atypical KMT2A-USP2 and KMT2A-USP8 rearrangements identified by mate pair sequencing in infant and childhood leukemia

scientific article published on 20 March 2020

De novo design and experimental characterization of ultrashort self-associating peptides

scientific article

De novo peptide design and experimental validation of histone methyltransferase inhibitors

scientific article

De novo peptide design and experimental validation of histone methyltransferase inhibitors

scientific article published in PLoS ONE

Derivation of ligands for the complement C3a receptor from the C-terminus of C5a

scientific article

Dynamically generated cutting planes for mixed-integer quadratically constrained quadratic programs and their incorporation into GloMIQO 2

scientific article published on 21 May 2014

Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family.

scientific article

Forcefield_PTM:Ab InitioCharge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications

scientific article (publication date: 10 December 2013)

Identification of a novel KMT2A/GIMAP8 gene fusion in a pediatric patient with acute undifferentiated leukemia

scientific article published on 20 October 2020

New compstatin peptides containing N-terminal extensions and non-natural amino acids exhibit potent complement inhibition and improved solubility characteristics

scientific article

Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double-blind predictions during the CASP11 experiment

scientific article

Princeton_TIGRESS: protein geometry refinement using simulations and support vector machines.

scientific article

Protein folding and de novo protein design for biotechnological applications

scientific article

WeFold: a coopetition for protein structure prediction

scientific article

conSSert: Consensus SVM Model for Accurate Prediction of Ordered Secondary Structure

scientific article

List of works by James B Smadbeck

Acute leukemias harboring KMT2A/MLLT10 fusion: a 10-year experience from a single genomics laboratory

Copy number variant analysis using genome-wide mate-pair sequencing

Cryptic and atypical KMT2A-USP2 and KMT2A-USP8 rearrangements identified by mate pair sequencing in infant and childhood leukemia

De novo design and experimental characterization of ultrashort self-associating peptides

De novo peptide design and experimental validation of histone methyltransferase inhibitors

De novo peptide design and experimental validation of histone methyltransferase inhibitors

Derivation of ligands for the complement C3a receptor from the C-terminus of C5a

Dynamically generated cutting planes for mixed-integer quadratically constrained quadratic programs and their incorporation into GloMIQO 2

Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family.

Forcefield_PTM:Ab InitioCharge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications

Identification of a novel KMT2A/GIMAP8 gene fusion in a pediatric patient with acute undifferentiated leukemia

New compstatin peptides containing N-terminal extensions and non-natural amino acids exhibit potent complement inhibition and improved solubility characteristics

Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double-blind predictions during the CASP11 experiment

Princeton_TIGRESS: protein geometry refinement using simulations and support vector machines.

Protein folding and de novo protein design for biotechnological applications

WeFold: a coopetition for protein structure prediction

conSSert: Consensus SVM Model for Accurate Prediction of Ordered Secondary Structure