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List of works by Yukiko Matsuoka

A comprehensive map of the influenza A virus replication cycle

scientific article

A comprehensive map of the mTOR signaling network

scientific article published on December 2010

A comprehensive molecular interaction map of the budding yeast cell cycle

scientific article

A comprehensive pathway map of epidermal growth factor receptor signaling

scientific article

A versatile platform for multilevel modeling of physiological systems: template/instance framework for large-scale modeling and simulation.

scientific article published on January 2013

Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.

scientific article

AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease

scientific article

An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation

scientific article

BioPAX support in CellDesigner

scientific article published on 21 October 2011

CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data

scientific article

Connecting the dots: role of standardization and technology sharing in biological simulation ⬇️

scientific article published on 08 October 2010

Consistent design schematics for biological systems: standardization of representation in biological engineering

scientific article (publication date: 6 August 2009)

Deconstructing the traditional Japanese medicine "Kampo": compounds, metabolites and pharmacological profile of maoto, a remedy for flu-like symptoms.

scientific article published on 24 October 2017

Disease severity is associated with differential gene expression at the early and late phases of infection in nonhuman primates infected with different H5N1 highly pathogenic avian influenza viruses

scientific article

Identifying problematic drugs based on the characteristics of their targets

scientific article published on September 2015

Influenza virus-host interactome screen as a platform for antiviral drug development

scientific article published on 20 November 2014

Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs ⬇️

scientific article published on August 31, 2012

Integrating pathways of Parkinson's disease in a molecular interaction map.

scientific article published on 07 July 2013

Integration of CellDesigner and SABIO-RK.

scientific article

Metabolic syndrome and robustness tradeoffs

scientific article

Multi-dimensional computational pipeline for large-scale deep screening of compound effect assessment: an in silico case study on ageing-related compounds

scientific article published on 26 November 2019

Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways.

scientific article

PathText: a text mining integrator for biological pathway visualizations

scientific article

Payao: a community platform for SBML pathway model curation

scientific article published on 5 April 2010

Software for systems biology: from tools to integrated platforms ⬇️

scientific article published on November 3, 2011

Software support for SBGN maps: SBGN-ML and LibSBGN.

scientific article

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.

scientific article published on 28 July 2011

Toward an integrated software platform for systems pharmacology

scientific article (publication date: December 2013)

systemsDock: a web server for network pharmacology-based prediction and analysis

scientific article

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