List of works by David M Engelthaler

A microbiome assessment of medical marijuana

scientific article

A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis

scientific article published on 28 December 2017

A unique multidrug-resistant clonal Trichophyton population distinct from Trichophyton mentagrophytes/Trichophyton interdigitale complex causing an ongoing alarming dermatophytosis outbreak in India: Genomic insights and resistance profile

scientific article published on 03 September 2019

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

scientific article published on 04 September 2020

Author Correction: Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

scientific article published on 21 February 2020

Bacterial Genome Wide Association Studies (bGWAS) and Transcriptomics Identifies Cryptic Antimicrobial Resistance Mechanisms in Acinetobacter baumannii

scientific article published on 02 September 2020

Bedaquiline Microheteroresistance after Cessation of Tuberculosis Treatment

scientific article published on 01 May 2019

BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei

scientific article

Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia

scientific article

Climatic and environmental patterns associated with hantavirus pulmonary syndrome, Four Corners region, United States

scientific article published on January 1999

Coccidioidal Meningitis in New York Traced to Texas by Fungal Genomic Analysis

scientific article published on 01 August 2019

Coccidioides immitis identified in soil outside of its known range - Washington, 2013.

scientific article published on May 2014

Coccidioidomycosis: adenosine deaminase levels, serologic parameters, culture results, and polymerase chain reaction testing in pleural fluid

scientific article published on March 2013

Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota

scientific article

Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis

scientific article

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

scientific article

Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens

scientific article

Coyotes as Reservoirs for Onchocerca lupi, United States, 2015-2018

scientific article published on 01 December 2020

Cryptic Microheteroresistance Explains Mycobacterium tuberculosis Phenotypic Resistance

scientific article published on 14 June 2017

Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal

scientific article

Cyclopropavir inhibits the normal function of the human cytomegalovirus UL97 kinase.

scientific article

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest.

scientific article

Defining the Pandemic at the State Level: Sequence-Based Epidemiology of the SARS-CoV-2 virus by the Arizona COVID-19 Genomics Union (ACGU)

scientific article published on 13 May 2020

Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing

scientific article

Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii

scientific article published in May 2010

Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii

article

Direct detection of Coccidioides from Arizona soils using CocciENV, a highly sensitive and specific real-time PCR assay

scientific article published on 8 March 2018

Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors

scientific article

Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona.

scientific article

Epidemiology and investigation of melioidosis, Southern Arizona

scientific article

Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter

scientific article

Flucytosine resistance in Cryptococcus gattii is indirectly mediated by the FCY2-FCY1-FUR1 pathway.

scientific article

Furthering the Continental Drift Speciation Hypothesis in the Pathogenic Cryptococcus Species Complexes

scientific article published on May 2017

Genome Sequence of Staphylococcus aureus Strain CA-347, a USA600 Methicillin-Resistant Isolate

scientific article published on 25 July 2013

Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant.

scientific article

Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role

scientific article published on 22 January 2019

Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic

scientific article

Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia

scientific article published on 15 July 2020

Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences

scientific article published on 31 July 2020

Human plague in the southwestern United States, 1957-2004: spatial models of elevated risk of human exposure to Yersinia pestis

scientific article published on May 2007

Hypervirulent emm59 Clone in Invasive Group A Streptococcus Outbreak, Southwestern United States

scientific article published on April 2016

Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis.

scientific article published on 2 May 2018

In vitro system for modeling influenza A virus resistance under drug pressure

scientific article

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

scientific article published in Scientific Reports

Isolation of Anti-Inflammatory and Epithelium Reinforcing Bacteroides and Parabacteroides Spp. from A Healthy Fecal Donor

scientific article published on 27 March 2020

Jet-Setting Koalas Spread Cryptococcus gattii VGII in Australia.

scientific article published on 5 June 2019

KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae

scientific article published on 10 August 2016

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

scientific article

MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent Serotype Specific Sub-populations and Distant Ancestors

scientific article

MLST-Based Population Genetic Analysis in a Global Context Reveals Clonality amongst Cryptococcus neoformans var. grubii VNI Isolates from HIV Patients in Southeastern Brazil

scientific article

Macroscale spatial variation in chronic wound microbiota: a cross-sectional study

scientific article

Mapping the Evolution of Hypervirulent Klebsiella pneumoniae

scientific article published on 21 July 2015

Mechanisms of Flucytosine Resistance in Cryptococcus gattii May Be Independent of the FCY2-FCY1-FUR1 Pathway

scientific article published on 4 October 2017

MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing

scientific article

Metagenomic characterization of antibiotic resistance genes in full-scale reclaimed water distribution systems and corresponding potable systems

article

Microbial Ecology and Water Chemistry Impact Regrowth of Opportunistic Pathogens in Full-Scale Reclaimed Water Distribution Systems

scientific article published on 02 August 2018

Minority Mycobacterium tuberculosis Genotypic Populations as an Indicator of Subsequent Phenotypic Resistance

scientific article published on 01 December 2019

Mitigating a COVID-19 Outbreak Among Major League Baseball Players - United States, 2020 ⬇️

scientific article published on 23 October 2020

Mixed Mycobacterium tuberculosis-Strain Infections Are Associated With Poor Treatment Outcomes Among Patients With Newly Diagnosed Tuberculosis, Independent of Pretreatment Heteroresistance

scholarly article by Sanghyuk S Shin et al published 5 November 2018 in Journal of Infectious Diseases

Modeling relationships between climate and the frequency of human plague cases in the southwestern United States, 1960-1997.

scientific article published on February 2002

Molecular evaluation of fluoroquinolone resistance in serial Mycobacterium tuberculosis isolates from individuals diagnosed with multidrug-resistant tuberculosis

scientific article published on 26 October 2020

Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry.

scientific article published on 5 June 2013

Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA

scientific article

Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry

scientific article

Mycobacterium tuberculosis Subculture Results in Loss of Potentially Clinically Relevant Heteroresistance.

scientific article published on 11 September 2017

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.

scientific article published on 25 August 2016

Necrotizing cutaneous mucormycosis after a tornado in Joplin, Missouri, in 2011.

scientific article

Next-generation sequencing of Coccidioides immitis isolated during cluster investigation

scientific article

Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: A promise for the near future

scientific article published on 28 October 2016

No resistance plasmid in Yersinia pestis, North America.

scientific article published on May 2010

Normalization of SARS-CoV-2 viral load via RT-qPCR provides higher-resolution data for comparison across time and between patients

scientific article published in 2021

Notes from the Field: Cluster of Acute Flaccid Myelitis in Five Pediatric Patients - Maricopa County, Arizona, 2016.

scientific article published on 21 July 2017

Novel <i>Odoribacter splanchnicus</i> Strain and Its Outer Membrane Vesicles Exert Immunoregulatory Effects <i>in vitro</i>

scientific article published on 12 November 2020

On the Emergence of Cryptococcus gattii in the Pacific Northwest: Ballast Tanks, Tsunamis, and Black Swans

scientific article published on 01 October 2019

PCR detection of Yersinia pestis in fleas: comparison with mouse inoculation

scientific article

Patterns of association with host and habitat: antibody reactive with Sin Nombre virus in small mammals in the major biotic communities of the southwestern United States.

scientific article

Phylogenetic Analysis of Francisella tularensis Group A.II Isolates from 5 Patients with Tularemia, Arizona, USA, 2015-2017

scholarly article by Dawn N Birdsell et al published May 2019 in Emerging Infectious Diseases

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest

scientific article published in PLoS ONE

Phylogeography of Francisella tularensis: global expansion of a highly fit clone

scientific article published on 27 February 2009

Population Genomics Of Cryptococcus neoformans var. grubii Reveals New Biogeographic Relationships And Finely Maps Hybridization

scientific article published in May 2017

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak

scientific article

Public health surveillance for coccidioidomycosis in Arizona

scientific article published on 18 May 2007

Quantitative competitive PCR as a technique for exploring flea-Yersina pestis dynamics

scientific article published on May 2000

Quantities of Yersinia pestis in fleas (Siphonaptera: Pulicidae, Ceratophyllidae, and Hystrichopsyllidae) collected from areas of known or suspected plague activity

scientific article published on May 2000

Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study

scientific article published on 25 May 2016

Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries

scientific article

Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis

scientific article

Real-time PCR assays for genotyping of Cryptococcus gattii in North America

scientific article

Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain".

scientific article published on November 2011

Rhizopus microsporus Infections Associated with Surgical Procedures, Argentina, 2006-2014

scientific article published on 01 May 2020

Short report: Decrease in seroprevalence of antibodies to hantavirus in rodents from 1993-1994 hantavirus pulmonary syndrome case sites

scientific article published in June 1998

Suspected Locally Acquired Coccidioidomycosis in Human, Spokane, Washington, USA

scientific article published on 17 March 2020

Testing for coccidioidomycosis among patients with community-acquired pneumonia

scientific article published on July 2008

The Reemergence of Aedes aegypti in Arizona

scientific article (publication date: 1997)

The detection of Coccidioides from ambient air in Phoenix, Arizona: Evidence of uneven distribution and seasonality

scientific article published on 10 September 2019

The impact of excess heat events in Maricopa County, Arizona: 2000--2005.

scientific article

Tick-Borne Relapsing Fever Outbreak Among a High School Football Team at an Outdoor Education Camping Trip, Arizona, 2014.

scientific article published on 18 July 2016

Timing the Origin of Cryptococcus gattii sensu stricto, Southeastern United States

scholarly article by Shawn R Lockhart et al published November 2018 in Emerging Infectious Diseases

Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens

scientific article published on 12 November 2011

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level.

scientific article published on 5 July 2017

Translating RNA sequencing into clinical diagnostics: opportunities and challenges.

scientific article

Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing

scientific article

Triple combination antiviral drug (TCAD) composed of amantadine, oseltamivir, and ribavirin impedes the selection of drug-resistant influenza A virus

scientific article

Triple combination of oseltamivir, amantadine, and ribavirin displays synergistic activity against multiple influenza virus strains in vitro.

scientific article

Update on the Epidemiology of coccidioidomycosis in the United States

scientific article published on 01 February 2019

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

scientific article published on 10 July 2015

Utility of Targeted, Amplicon-Based Deep Sequencing To Detect Resistance to First-Line Tuberculosis Drugs in Botswana

scientific article published on 22 October 2019

Utility of Whole-Genome Sequencing to Ascertain Locally Acquired Cases of Coccidioidomycosis, Washington, USA

scientific article published in 2019

Valley fever: finding new places for an old disease: Coccidioides immitis found in Washington State soil associated with recent human infection

scientific article

Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections

scientific article

Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity

scientific article

Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011

scientific article published in 2012

Whole-Genome Analysis of Cryptococcus gattii, Southeastern United States

scientific article published on June 2016

Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections

scientific article

Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation

scientific article published on 30 April 2019

Worldwide Phylogenetic Distributions and Population Dynamics of the Genus Histoplasma

scientific article

Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States

scholarly article by Shaokang Zhang et al published January 2019 in Emerging Infectious Diseases

Paulina is supported by:

About Paulina

Help