List of works by David Bouyssié

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

publication published on 30 March 2022

A proteomics sample metadata representation for multiomics integration and big data analysis

scientific article published in 2021

Bacterial protein-O-mannosylating enzyme is crucial for virulence of Mycobacterium tuberculosis

scientific article published on 2 April 2013

Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.

scientific article

Chronic ethanol feeding affects proteasome-interacting proteins

scientific journal article

Comparing 22 Popular Phosphoproteomics Pipelines for Peptide Identification and Site Localization

scientific article published on 04 February 2020

Comprehensive human urine standards for comparability and standardization in clinical proteome analysis

scientific article

Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

scientific article published on July 2015

Extensive analysis of the cytoplasmic proteome of human erythrocytes using the peptide ligand library technology and advanced mass spectrometry

scientific article

Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy

scientific article published on 03 March 2020

HDX-Viewer: interactive 3D visualization of hydrogen-deuterium exchange data

scientific article published on 01 December 2019

In-depth exploration of cerebrospinal fluid by combining peptide ligand library treatment and label-free protein quantification

scientific article

Isoginkgetin derivative IP2 enhances the adaptive immune response against tumor antigens

scientific article published on 01 March 2021

Label-free quantification and shotgun analysis of complex proteomes by one-dimensional SDS-PAGE/NanoLC-MS: evaluation for the large scale analysis of inflammatory human endothelial cells

scientific article

Label-free quantitative urinary proteomics identifies the arginase pathway as a new player in congenital obstructive nephropathy

scientific article

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human [...]

scientific article

Potential Plasticity of the Mannoprotein Repertoire Associated to Mycobacterium tuberculosis Virulence Unveiled by Mass Spectrometry-Based Glycoproteomics

scientific article published on 18 May 2020

Proceedings of the EuBIC Winter School 2017.

scientific article published on 03 April 2017

Proceedings of the EuBIC Winter School 2019

scientific article published on 01 March 2019

Proceedings of the EuBIC developer's meeting 2018

article

Proline: an efficient and user-friendly software suite for large-scale proteomics

scientific article published on 25 February 2020

Quantitative proteomic analysis to decipher the differential apoptotic response of bortezomib-treated APL cells before and after retinoic acid differentiation reveals involvement of protein toxicity mechanisms

scientific article

Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.

scientific article

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

scientific article published in December 2023

mzDB: a file format using multiple indexing strategies for the efficient analysis of large LC-MS/MS and SWATH-MS data sets

scientific article

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