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List of works by Matthew Waldor

A Bacterial Pathogen Senses Host Mannose to Coordinate Virulence

scientific article published on 25 September 2019

A Conserved Streptococcal Virulence Regulator Controls the Expression of a Distinct Class of M-Like Proteins

scientific article published on 22 October 2019

A Cytosine Methyltransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen [corrected].

scientific article

A D, D-carboxypeptidase is required for Vibrio cholerae halotolerance

scientific article

A FACS-Based Genome-wide CRISPR Screen Reveals a Requirement for COPI in Chlamydia trachomatis Invasion

scientific article published on 14 December 2018

A Genome-Scale Antibiotic Screen in Serratia marcescens Identifies YdgH as a Conserved Modifier of Cephalosporin and Detergent Susceptibility

scientific article published on 07 September 2021

A Genome-Wide Screen Reveals that the Vibrio cholerae Phosphoenolpyruvate Phosphotransferase System Modulates Virulence Gene Expression

scientific article

A Multiorgan Trafficking Circuit Provides Purifying Selection of Listeria monocytogenes Virulence Genes

scientific article published on 17 December 2019

A New Suite of Allelic-Exchange Vectors for the Scarless Modification of Proteobacterial Genomes

scientific article published on 01 August 2019

A Poly-N-acetylglucosamine-Shiga toxin broad-spectrum conjugate vaccine for Shiga toxin-producing Escherichia coli.

scientific article published on 25 March 2014

A Transmissible Plasmid-Borne Pathogenicity Island Confers Piscibactin Biosynthesis in the Fish Pathogen Photobacterium damselae subsp. piscicida.

scientific article

A Transposon Screen Identifies Genetic Determinants of Vibrio cholerae Resistance to High-Molecular-Weight Antibiotics

scientific article published on 23 May 2016

A Vibrio cholerae BolA-Like Protein Is Required for Proper Cell Shape and Cell Envelope Integrity

scientific article published on 09 July 2019

A Vibrio parahaemolyticus T3SS effector mediates pathogenesis by independently enabling intestinal colonization and inhibiting TAK1 activation

scientific article published on 25 April 2013

A cell wall damage response mediated by a sensor kinase/response regulator pair enables beta-lactam tolerance

scientific article

A double, long polar fimbria mutant of Escherichia coli O157:H7 expresses Curli and exhibits reduced in vivo colonization

scientific article published on 9 January 2012

A dynamic, mitotic-like mechanism for bacterial chromosome segregation

scientific article published on December 2006

A family of ParA-like ATPases promotes cell pole maturation by facilitating polar localization of chemotaxis proteins

scientific article

A hybrid approach for the automated finishing of bacterial genomes

scientific article

A live vaccine rapidly protects against cholera in an infant rabbit model.

scientific article

A multidomain hub anchors the chromosome segregation and chemotactic machinery to the bacterial pole

scientific article published on October 2012

A national cholera vaccine stockpile--a new humanitarian and diplomatic resource

scientific article

A novel peptidoglycan binding protein crucial for PBP1A-mediated cell wall biogenesis in Vibrio cholerae

scientific article

A satellite phage-encoded antirepressor induces repressor aggregation and cholera toxin gene transfer

scientific article published on August 2002

A streptococcal Fic domain-containing protein disrupts blood-brain barrier integrity by activating moesin in endothelial cells.

scientific article published on 9 May 2019

A toxin-antitoxin system promotes the maintenance of an integrative conjugative element

scientific article

ARTIST: high-resolution genome-wide assessment of fitness using transposon-insertion sequencing

scientific article

ATP negatively regulates the initiator protein of Vibrio cholerae chromosome II replication.

scholarly article

Activation of the Vibrio cholerae SOS response is not required for intestinal cholera toxin production or colonization

scientific article

Adrenergic regulation of bacterial virulence

scientific article published on 15 March 2007

An 'i' for ingenuity

scientific article published on 01 July 2019

An Escherichia coli O157-specific engineered pyocin prevents and ameliorates infection by E. coli O157:H7 in an animal model of diarrheal disease

scientific article published on 26 September 2011

An Oral Inoculation Infant Rabbit Model for Shigella Infection

scientific article published on 21 January 2020

Anaerobic nitrate reduction divergently governs population expansion of the enteropathogen Vibrio cholerae

scientific article published on 01 October 2018

Analysis of Bottlenecks in Experimental Models of Infection

scientific article

Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence

scientific article

Antimicrobial peptides activate the Vibrio cholerae sigmaE regulon through an OmpU-dependent signalling pathway

scientific article

Autorepression of RctB, an initiator of Vibrio cholerae chromosome II replication

scientific article published in January 2006

Autotransporters but not pAA are critical for rabbit colonization by Shiga toxin-producing Escherichia coli O104:H4.

scientific article published on January 2014

Back to the future: studying cholera pathogenesis using infant rabbits

scientific article

Bacterial Adrenergic Sensors Regulate Virulence of Enteric Pathogens in the Gut

scientific article

Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli.

scientific article

Bacteriophage control of bacterial virulence

scientific article

CRISPR Screen Reveals that EHEC's T3SS and Shiga Toxin Rely on Shared Host Factors for Infection.

scientific article

CRISPR/Cas9 Screens Reveal Requirements for Host Cell Sulfation and Fucosylation in Bacterial Type III Secretion System-Mediated Cytotoxicity

scientific article published on 19 July 2016

CTXphi and Vibrio cholerae: exploring a newly recognized type of phage-host cell relationship

scientific article

CadA negatively regulates Escherichia coli O157:H7 adherence and intestinal colonization.

scientific article published on 15 September 2008

Cell separation in Vibrio cholerae is mediated by a single amidase whose action is modulated by two nonredundant activators

scientific article published on 2 September 2014

Characterization of XerC- and XerD-dependent CTX phage integration in Vibrio cholerae

scientific article published in November 2004

Characterization of a higBA toxin-antitoxin locus in Vibrio cholerae

scientific article published on 3 November 2006

Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae

scientific article

Chemoproteomic profiling of host and pathogen enzymes active in cholera

scientific article published on 22 February 2016

Classic reaction kinetics can explain complex patterns of antibiotic action

scientific article

Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs

scientific article

Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection

scientific article

Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen

scientific article

Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications

scientific article published on 08 June 2020

Comparison of Shiga toxin production by hemolytic-uremic syndrome-associated and bovine-associated Shiga toxin-producing Escherichia coli isolates.

scientific article

Comprehensive identification of Vibrio vulnificus genes required for growth in human serum.

scientific article published on 26 April 2018

Conserved small RNAs govern replication and incompatibility of a diverse new plasmid family from marine bacteria

scientific article

Control of SXT integration and excision

scientific article

Correction: A Cytosine Methytransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen

scientific article published on 11 December 2015

Correction: High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs.

scientific article published on 14 November 2008

Coupling chemosensory array formation and localization.

scientific article published on 23 October 2017

Critical role for a promoter discriminator in RpoS control of virulence in Edwardsiella piscicida

scientific article published on 31 August 2018

Critical roles for stx2, eae, and tir in enterohemorrhagic Escherichia coli-induced diarrhea and intestinal inflammation in infant rabbits

scientific article published on December 2003

Crystal Structures of a CTX  pIII Domain Unbound and in Complex with a Vibrio cholerae TolA Domain Reveal Novel Interaction Interfaces

scientific article

D-amino acids govern stationary phase cell wall remodeling in bacteria

scientific article published on September 2009

Dam methyltransferase is required for stable lysogeny of the Shiga toxin (Stx2)-encoding bacteriophage 933W of enterohemorrhagic Escherichia coli O157:H7

scientific article published on 2 November 2007

Deciphering functional redundancy in the human microbiome

scientific article published on 04 December 2020

Deciphering the landscape of host barriers to Listeria monocytogenes infection.

scientific article

Deciphering the origins and tracking the evolution of cholera epidemics with whole-genome-based molecular epidemiology

scientific article published on 10 September 2013

Deletion of a Vibrio cholerae ClC channel results in acid sensitivity and enhanced intestinal colonization

scientific article

Determinants of entry exclusion within Eex and TraG are cytoplasmic

scientific article published on 15 June 2007

Differential requirement for PBP1a and PBP1b in in vivo and in vitro fitness of Vibrio cholerae

scientific article published on 10 March 2014

Disarming pathogens--a new approach for antibiotic development

scientific article published on 01 January 2006

Distinct centromere-like parS sites on the two chromosomes of Vibrio spp.

scientific article published on 11 May 2007

Distinct pathways for modification of the bacterial cell wall by non-canonical D-amino acids

scientific article published on 26 July 2011

Distinct replication requirements for the two Vibrio cholerae chromosomes

scientific article published on 01 August 2003

Distinct segregation dynamics of the two Vibrio cholerae chromosomes

scientific article published on 01 January 2005

Distribution of centromere-like parS sites in bacteria: insights from comparative genomics

scientific article published on 28 September 2007

Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes

scientific article

Embryonic macrophages function during early life to determine invariant natural killer T cell levels at barrier surfaces

scientific article published on 26 May 2021

Emerging knowledge of regulatory roles of D-amino acids in bacteria

scientific article

Endopeptidase-mediated beta lactam tolerance

scientific article published on 17 April 2015

Entering the era of bacterial epigenomics with single molecule real time DNA sequencing

scientific article

Enterohemorrhagic Escherichia coli O157:H7 gal mutants are sensitive to bacteriophage P1 and defective in intestinal colonization

scientific article published on 11 December 2006

Erratum: Chemoproteomic profiling of host and pathogen enzymes active in cholera

scientific article published on 01 May 2016

Erratum: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

scientific article published in 2013

EspFU, a type III-translocated effector of actin assembly, fosters epithelial association and late-stage intestinal colonization by E. coli O157:H7.

scientific article published on 6 December 2007

Establishing polar identity in gram-negative rods

scientific article published on 09 September 2013

Evolutionary and functional analyses of variants of the toxin-coregulated pilus protein TcpA from toxigenic Vibrio cholerae non-O1/non-O139 serogroup isolates

scientific article

Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing

scientific article published on 17 February 2009

Filamentous phage integration requires the host recombinases XerC and XerD

scientific article published in Nature

Filamentous phages linked to virulence of Vibrio cholerae

scientific article (publication date: February 2003)

Formation of SXT tandem arrays and SXT-R391 hybrids

scientific article

Fucose sensing regulates bacterial intestinal colonization ⬇️

scientific article published on November 18, 2012

Genetic Determinants of Penicillin Tolerance in Vibrio cholerae

scientific article published on 24 September 2018

Genetic analysis of Vibrio parahaemolyticus intestinal colonization

scientific article published on 16 May 2016

Genetic analysis of activation of the Vibrio cholerae Cpx pathway

scientific article published on 19 June 2009

Genetic analysis of the role of the conserved inner membrane protein CvpA in EHEC resistance to deoxycholate

scientific article published on 23 December 2020

Genetic dissection of the fermentative and respiratory contributions supporting Vibrio cholerae hypoxic growth

scientific article published on 06 July 2020

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

scientific article

Genomic and Phenotypic Insights for Toxigenic Clinical Vibrio cholerae O141

scientific article published on 01 March 2022

Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae

scientific article published on August 2002

Genomic and functional analysis of ICEPdaSpa1, a fish-pathogen-derived SXT-related integrating conjugative element that can mobilize a virulence plasmid.

scientific article published on 7 March 2008

Global gene expression and phenotypic analysis of a Vibrio cholerae rpoH deletion mutant

scientific article

Growth-Optimized Aminoacyl-tRNA Synthetase Levels Prevent Maximal tRNA Charging

scientific article published on 21 July 2020

Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression

scientific article published in July 2004

Hfq negatively regulates type III secretion in EHEC and several other pathogens

scientific article published on 24 August 2009

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model–based analyses of transposon-insertion sequencing data ⬇️

scientific article published on July 30, 2013

High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4.

scientific article

High-throughput fitness screening and transcriptomics identify a role for a type IV secretion system in the pathogenesis of Crohn’s disease-associated Escherichia coli

scientific article published in 2021

High-throughput sequencing reveals suppressors of Vibrio cholerae rpoE mutations: one fewer porin is enough

scientific article published on 20 July 2009

High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs

scientific article

Horizontal gene transfer: linking sex and cell fate

scientific article published on February 2013

Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

scientific article

Identification of operators and promoters that control SXT conjugative transfer

scientific article

Identification of small RNAs in diverse bacterial species

scientific article

Independent control of replication initiation of the two Vibrio cholerae chromosomes by DnaA and RctB.

scientific article published on September 2006

Infant Rabbit Model for Diarrheal Diseases

scientific article published on 03 August 2015

Inflammation and disintegration of intestinal villi in an experimental model for Vibrio parahaemolyticus-induced diarrhea.

scientific article

Insights into Vibrio cholerae intestinal colonization from monitoring fluorescently labeled bacteria

scientific article (publication date: October 2014)

Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow.

scientific article published on 05 July 2010

Interactions between inner membrane proteins in donor and recipient cells limit conjugal DNA transfer

scientific article published on 01 June 2005

Interplay between microbial d-amino acids and host d-amino acid oxidase modifies murine mucosal defence and gut microbiota

scientific article published on 25 July 2016

LexA cleavage is required for CTX prophage induction

scientific article

LexA represses CTXphi transcription by blocking access of the alpha C-terminal domain of RNA polymerase to promoter DNA

scientific article published on 17 October 2006

Mapping the ecological networks of microbial communities.

scientific article published on 11 December 2017

Meeting cholera's challenge to Haiti and the world: a joint statement on cholera prevention and care

scientific article

Mining regulatory 5'UTRs from cDNA deep sequencing datasets

scientific article

Mobile antibiotic resistance encoding elements promote their own diversity

scientific article

Mobilizable genomic islands: going mobile with oriT mimicry

scientific article published on November 2010

Modulation of Peptidoglycan Synthesis by Recycled Cell Wall Tetrapeptides

scientific article published on 01 April 2020

Molecular Dissection of the Essential Features of the Origin of Replication of the Second Vibrio cholerae Chromosome.

scientific article published on 28 July 2015

Non-O1 Vibrio cholerae unlinked to cholera in Haiti

scientific article published on 3 October 2012

Nontoxigenic Vibrio cholerae Challenge Strains for Evaluating Vaccine Efficacy and Inferring Mechanisms of Protection

scientific article published on 07 April 2022

Nucleolar c-Myc recruitment by a Vibrio T3SS effector promotes host cell proliferation and bacterial virulence

scientific article published on 21 December 2020

Oral immunization with a probiotic cholera vaccine induces broad protective immunity against Vibrio cholerae colonization and disease in mice.

scientific article published on 31 May 2019

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

scientific article

ParA2, a Vibrio cholerae chromosome partitioning protein, forms left-handed helical filaments on DNA.

scientific article

ParP prevents dissociation of CheA from chemotactic signaling arrays and tethers them to a polar anchor

scientific article

Peptidoglycan synthesis in Mycobacterium tuberculosis is organized into networks with varying drug susceptibility

scientific article

Phage regulatory circuits and virulence gene expression

scientific article

Phosphorylation of Deinococcus radiodurans RecA Regulates Its Activity and May Contribute to Radioresistance

scientific article published on 2 June 2016

Pivotal role of the Francisella tularensis heat-shock sigma factor RpoH.

scientific article

PprA contributes to Deinococcus radiodurans resistance to nalidixic acid, genome maintenance after DNA damage and interacts with deinococcal topoisomerases

scientific article published on 15 January 2014

Probing the diversity and regulation of tRNA modifications

scientific article published on 11 July 2020

RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression.

scientific article

RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA

scientific article

Reactogenicity of live-attenuated Vibrio cholerae vaccines is dependent on flagellins

scientific article

Reciprocal regulation of resistance-nodulation-division efflux systems and the Cpx two-component system in Vibrio cholerae

scientific article

Regulatory cross-talk links Vibrio cholerae chromosome II replication and segregation.

scientific article

Remodeling of the intestinal brush border underlies adhesion and virulence of an enteric pathogen

scientific article

Requirement for Vibrio cholerae integration host factor in conjugative DNA transfer

scientific article published on August 2006

RpoS and quorum sensing control expression and polar localization of Vibrio cholerae chemotaxis cluster III proteins in vitro and in vivo.

scientific article

SOS response promotes horizontal dissemination of antibiotic resistance genes

scientific article

SXT-related integrating conjugative element in New World Vibrio cholerae.

scientific article

Sequence tag-based analysis of microbial population dynamics

scientific article

Serine/threonine kinase PpkA coordinates the interplay between T6SS2 activation and quorum sensing in the marine pathogen Vibrio alginolyticus

scientific article published on 4 January 2018

Shaping bacterial genomes with integrative and conjugative elements

scientific article

Shiga toxin remodels the intestinal epithelial transcriptional response to Enterohemorrhagic Escherichia coli

scientific article published on 02 February 2021

Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes

scientific article published on 15 June 2015

Structural basis for the broad specificity of a new family of amino-acid racemases

scientific article

Studies of dynamic protein-protein interactions in bacteria using Renilla luciferase complementation are undermined by nonspecific enzyme inhibition

scientific article

Substrate specificity of an elongation-specific peptidoglycan endopeptidase and its implications for cell wall architecture and growth of Vibrio cholerae

scientific article published on 29 July 2013

Synchronous replication initiation of the two Vibrio cholerae chromosomes.

scientific article published in July 2004

Targeting QseC signaling and virulence for antibiotic development

scientific article

Targeting the replication initiator of the second Vibrio chromosome: towards generation of vibrionaceae-specific antimicrobial agents

scientific article

Testing COVID-19 therapies to prevent progression of mild disease

scientific article published on 06 May 2020

The CTXphi repressor RstR binds DNA cooperatively to form tetrameric repressor-operator complexes

scientific article published on 10 November 2003

The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes

scientific article

The QseG lipoprotein impacts the virulence of enterohemorrhagic E. coli and Citrobacter rodentium and regulates flagellar phase variation in Salmonella enterica serovar Typhimurium.

scientific article published on 22 January 2018

The RNA degradosome promotes tRNA quality control through clearance of hypomodified tRNA

scientific article published on 08 January 2019

The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups

scientific article published on 16 February 2007

The Vibrio cholerae ToxR-regulated porin OmpU confers resistance to antimicrobial peptides

scientific article

The Vibrio parahaemolyticus effector VopC mediates Cdc42-dependent invasion of cultured cells but is not required for pathogenicity in an animal model of infection

scientific article

The current ICE age: biology and evolution of SXT-related integrating conjugative elements.

scientific article

The design and analysis of transposon insertion sequencing experiments

scientific article published in January 2016

The hydrophilic translocator for Vibrio parahaemolyticus, T3SS2, is also translocated

scientific article

The locus of enterocyte effacement-encoded effector proteins all promote enterohemorrhagic Escherichia coli pathogenicity in infant rabbits

scientific article published on March 2005

The origin of the Haitian cholera outbreak strain

scientific article

The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators

scientific article

The three vibrio cholerae chromosome II-encoded ParE toxins degrade chromosome I following loss of chromosome II

scientific article

Time-Resolved Transposon Insertion Sequencing Reveals Genome-Wide Fitness Dynamics during Infection

scientific article published on 3 October 2017

Tn-Seq analysis of Vibrio cholerae intestinal colonization reveals a role for T6SS-mediated antibacterial activity in the host

scientific article published on December 2013

Transcription of the Toxin Genes Present within the Staphylococcal Phage φSa3ms Is Intimately Linked with the Phage's Life Cycle ⬇️

scientific article published on December 1, 2003

Transient intestinal colonization by a live-attenuated oral cholera vaccine induces protective immune responses in streptomycin-treated mice

scientific article published on 15 June 2020

Transient shielding of intimin and the type III secretion system of enterohemorrhagic and enteropathogenic Escherichia coli by a group 4 capsule

scientific article

Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization

scientific article published on 12 August 2019

Type 2 secretion promotes enterohemorrhagic Escherichia coli adherence and intestinal colonization.

scientific article published on 3 March 2008

Type I interferon remodels lysosome function and modifies intestinal epithelial defense

scientific article published on 10 November 2020

Type III secretion is essential for the rapidly fatal diarrheal disease caused by non-O1, non-O139 Vibrio cholerae. ⬇️

scientific article

Unsupervised Learning Approach for Comparing Multiple Transposon Insertion Sequencing Studies

scientific article published in 2019

Vibrio cholerae LexA coordinates CTX prophage gene expression

scientific article published on 7 August 2009

Vibrio cholerae ParE2 poisons DNA gyrase via a mechanism distinct from other gyrase inhibitors

scientific article

Vibrio cholerae interactions with the gastrointestinal tract: lessons from animal studies.

scientific article published on January 2009

Vibrio spp. infections

Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids

scientific article

Where next for microbiome research?

scientific article

pIIICTX, a predicted CTXphi minor coat protein, can expand the host range of coliphage fd to include Vibrio cholerae

scientific article

par genes and the pathology of chromosome loss in Vibrio cholerae.

scholarly article

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes

scientific article

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