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List of works by Lydia M Contreras

"A high-throughput and rapid computational method for screening of RNA post-transcriptional modifications that can be recognized by target proteins".

scientific article published on 31 January 2018

A Genome-Wide Search for Ionizing-Radiation-Responsive Elements in Deinococcus radiodurans Reveals a Regulatory Role for the DNA Gyrase Subunit A Gene's 5' Untranslated Region in the Radiation and Desiccation Response.

scientific article published on 14 April 2017

Adaptation of Tri-molecular fluorescence complementation allows assaying of regulatory Csr RNA-protein interactions in bacteria.

scientific article published on 26 September 2014

Advances and prospects in metabolic engineering of Zymomonas mobilis

scientific article published on 5 April 2018

Bioinformatic Application of Fluorescence-Based In Vivo RNA Regional Accessibility Data to Identify Novel sRNA Targets

scientific article published on 01 January 2020

Cellular RNA is chemically modified by exposure to air pollution mixtures

scientific article

Codon Selection Affects Recruitment of Ribosome-Associating Factors during Translation

scientific article published on 10 December 2019

Computational approaches in design of nucleic acid-based therapeutics

scientific article published on 18 March 2018

Defective Ribonucleoproteins, Mistakes in RNA Processing, and Diseases

scientific article published on 16 February 2017

Directed Evolution of Heterologous tRNAs Leads to Reduced Dependence on Post-transcriptional Modifications.

scientific article

Discovery of Posttranscriptional Regulatory RNAs Using Next Generation Sequencing Technologies ⬇️

scientific article published on January 1, 2013

Discovery of ethanol-responsive small RNAs in Zymomonas mobilis

scientific article published on 2 May 2014

Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence

scientific article

Fluorescence-Based Methods for Characterizing RNA Interactions In Vivo

scientific article published in January 2018

Functional implications of ribosomal RNA methylation in response to environmental stress.

scientific article

Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions

scientific article

Group II intron-ribosome association protects intron RNA from degradation

scientific article published on 17 September 2013

High-throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites

scientific article published in Nature Communications

Identification and Characterization of 5' Untranslated Regions (5'UTRs) in Zymomonas mobilis as Regulatory Biological Parts

scientific article published on 8 December 2017

Identification of novel sRNAs in mycobacterial species

scientific article

Imposed Environmental Stresses Facilitate Cell-Free Nanoparticle Formation by Deinococcus radiodurans

scientific article published on 7 July 2017

Integrative FourD omics approach profiles the target network of the carbon storage regulatory system.

scientific article

Methods and advances in RNA characterization and design

scientific article published on 01 July 2018

Multiple Small RNAs Interact to Co-regulate Ethanol Tolerance in Zymomonas mobilis

scientific article published on 04 March 2020

Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions

scientific article

Optimizing metabolite production using periodic oscillations

scientific article

Post-transcriptional air pollution oxidation to the cholesterol biosynthesis pathway promotes pulmonary stress phenotypes

scientific article published on 22 July 2020

Quaternary arrangement of an active, native group II intron ribonucleoprotein complex revealed by small-angle X-ray scattering

scientific article published on 24 February 2014

Rational Modular RNA Engineering Based on In Vivo Profiling of Structural Accessibility.

scientific article published on 10 August 2017

Regulatory RNAs: charming gene management styles for synthetic biology applications

scientific article

Regulatory non-coding sRNAs in bacterial metabolic pathway engineering

scientific article published on 01 December 2018

Self‐cleaving purification tags re‐engineered for rapid Topo® cloning ⬇️

scientific article published on 01 September 2010

Slowing Translation between Protein Domains by Increasing Affinity between mRNAs and the Ribosomal Anti-Shine-Dalgarno Sequence Improves Solubility

scientific article published on 25 November 2015

Small RNAs in mycobacteria: an unfolding story

scientific article

Strain engineering via regulatory noncoding RNAs: not a one-blueprint-fits-all

Synthetic Biology of Small RNAs and Riboswitches

scientific article published on 01 May 2018

Synthetic chimeras with orthogonal ribosomal proteins increase translation yields by recruiting mRNA for translation as measured by profiling active ribosomes

scientific article published on 9 January 2016

Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation

scientific article

Zymomonas mobilis as a model system for production of biofuels and biochemicals

scientific article

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