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List of works by Manuel Spannagl

A Genome-Wide Survey of Date Palm Cultivars Supports Two Major Subpopulations in Phoenix dactylifera

scientific article published on 8 May 2015

A chromosome conformation capture ordered sequence of the barley genome

scientific article

A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms

scientific article

A haplotype-led approach to increase the precision of wheat breeding

scientific article published on 25 November 2020

A physical, genetic and functional sequence assembly of the barley genome ⬇️

scientific article published on October 17, 2012

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

scientific article

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

scientific article

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

article

Analysing complex Triticeae genomes - concepts and strategies.

scientific article published on 06 September 2013

Analysis of the bread wheat genome using whole-genome shotgun sequencing

scientific article

Ancient hybridizations among the ancestral genomes of bread wheat

scientific article

Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation

scientific article

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives.

scientific article

Chromosome-level genome assembly and population genomic resource to accelerate orphan crop lablab breeding

scientific article published in 2023

Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars

scientific article published on 17 August 2018

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Comparative Genomics and Functional Studies of Wheat BED-NLR Loci

scientific article published on 26 November 2020

Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation.

scientific article

Computational prediction of candidate proteins for S-nitrosylation in Arabidopsis thaliana

scientific article

De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium Resistance Genes in East Asian Genotypes

scientific article published on 27 November 2020

Deciphering systemic wound responses of the pumpkin extrafascicular phloem by metabolomics and stable isotope-coded protein labeling

scientific article published on 19 October 2012

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

scientific article published on 12 June 2013

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species

scientific article published on 15 May 2015

Durum wheat genome highlights past domestication signatures and future improvement targets

scientific article published on 08 April 2019

European Flint reference sequences complement the maize pan-genome

European maize genomes highlight intraspecies variation in repeat and gene content

scientific article published on 27 July 2020

Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor

scientific article published on 23 May 2013

Exploring the genomes: from Arabidopsis to crops

scientific article published on January 2011

From plant genomes to phenotypes

article

Genome mapping of seed-borne allergens and immunoresponsive proteins in wheat

scientific article published on 17 August 2018

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

scientific article

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Hidden variation in polyploid wheat drives local adaptation

scientific article published on 09 August 2018

Impact of transposable elements on genome structure and evolution in bread wheat

Large-scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea

scientific article published on 06 October 2006

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

scholarly article

Long-read sequence assembly: a technical evaluation in barley

scientific article published on 01 July 2021

Looking deep inside: detection of low-abundance proteins in leaf extracts of Arabidopsis and phloem exudates of pumpkin

scientific article

MIPS PlantsDB: a database framework for comparative plant genome research

scientific article

MIPS plant genome information resources

scientific article published on 01 January 2007

MIPS: curated databases and comprehensive secondary data resources in 2010

scientific article

MIPSPlantsDB--plant database resource for integrative and comparative plant genome research

scientific article (publication date: 2007)

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Munich information center for protein sequences plant genome resources: a framework for integrative and comparative analyses 1(W).

scientific article published in July 2005

PGSB PlantsDB: updates to the database framework for comparative plant genome research

scientific article

PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes

scientific article published on January 2016

PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data

scientific article

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

scientific article published in Science

Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.).

scientific article

Shifting the limits in wheat research and breeding using a fully annotated reference genome

scientific article

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

scientific article published on 18 December 2019

The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding

scientific article published on 12 November 2020

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

scientific article

The Medicago genome provides insight into the evolution of rhizobial symbioses

scientific article

The Sorghum bicolor genome and the diversification of grasses

scientific article

The Systems Architecture of Molecular Memory in Poplar after Abiotic Stress

scientific article published on 31 January 2019

The barley pan-genome reveals the hidden legacy of mutation breeding

scientific article published on 25 November 2020

The big five of the monocot genomes

scientific article published on 08 February 2016

The pseudogenes of barley

scientific article

The repetitive landscape of the 5100 Mbp barley genome

scientific article published on 20 December 2017

The transcriptional landscape of polyploid wheat

scientific article

Towards positional isolation of three quantitative trait loci conferring resistance to powdery mildew in two Spanish barley landraces

scientific article

Tracing the ancestry of modern bread wheats

scientific article published on 01 May 2019

Unlocking plant genetics with telomere-to-telomere genome assemblies

scientific article published on 24 July 2024

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

scientific article

chromoWIZ: a web tool to query and visualize chromosome-anchored genes from cereal and model genomes.

scientific article published on 10 December 2014

transPLANT Resources for Triticeae Genomic Data.

scientific article

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