List of works by Katherine J Siddle

A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection

scientific article

Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal

scientific article published on 30 March 2020

Benchmarking Metagenomics Tools for Taxonomic Classification

scientific article published on 01 August 2019

Capturing diverse microbial sequence with comprehensive and scalable probe design

scholarly article published 12 March 2018

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

scientific article published on 04 February 2019

Co-circulating mumps lineages at multiple geographic scales

Combining genomics and epidemiology to track mumps virus transmission in the United States

scientific article published on 11 February 2020

Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time

scientific article published on 17 August 2020

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

scientific article published on 01 September 2020

Evidence of Ebola Virus Replication and High Concentration in Semen of a Patient During Recovery

scientific article published on 3 June 2017

Field evaluation of a Pan-Lassa rapid diagnostic test during the 2018 Nigerian Lassa fever outbreak

scientific article published on 26 May 2020

Genetic diversity and evidence for population admixture in Batak Negritos from Palawan

scientific article (publication date: September 2011)

Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018

article by Katherine J Siddle et al published 17 October 2018 in The New England Journal of Medicine

Genomic Evidence for Local Adaptation of Hunter-Gatherers to the African Rainforest

scientific article published on 08 August 2019

Lassa Virus Genetics

scientific article published on 17 May 2020

Molecular epidemiology of Plasmodium falciparum by multiplexed amplicon deep sequencing in Senegal

scientific article published on 10 November 2020

Negative Selection by Spiral Inertial Microfluidics Improves Viral Recovery and Sequencing from Blood.

scientific article published on 14 March 2018

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

scientific article published on 10 December 2020

Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events

scientific article published on 25 August 2020

Population variation in miRNAs and isomiRs and their impact on human immunity to infection

scientific article published on 30 July 2020

Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria

scientific article published on 21 February 2020

The Red Queen's long race: human adaptation to pathogen pressure

scientific article

The epigenomic landscape of African rainforest hunter-gatherers and farmers

scientific article

The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists

scientific article published in January 2014

Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection.

scientific article

Widespread shortening of 3' untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection

article

bacterial infection drives the expression dynamics of microRNAs and their isomiRs

scientific article

miR-222 isoforms are differentially regulated by type-I interferon

scientific article published on 20 December 2017