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List of works by Halil Kilicoglu

A methodology for extending domain coverage in SemRep

scientific article

Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management

scientific article

An Ensemble Method for Spelling Correction in Consumer Health Questions

scientific article

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease

scientific article

Assigning factuality values to semantic relations extracted from biomedical research literature.

scientific article

Attention-Gated Graph Convolutions for Extracting Drug Interaction Information from Drug Labels

scientific article published in March 2021

Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference

scientific article

Automatic categorization of self-acknowledged limitations in randomized controlled trial publications

scientific article published in April 2024

Automatic recognition of self-acknowledged limitations in clinical research literature

scientific article published on 01 July 2018

Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation

scientific article

Automatically classifying question types for consumer health questions

scientific article published on 14 November 2014

Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs

scientific article

Bio-SCoRes: A Smorgasbord Architecture for Coreference Resolution in Biomedical Text

scientific article

Biological event composition ⬇️

scientific article published on June 26, 2012

Biomedical text mining for research rigor and integrity: tasks, challenges, directions.

scientific article published on 13 June 2017

Broad-coverage biomedical relation extraction with SemRep

scientific article published on 14 May 2020

Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions

scientific article

Combining relevance assignment with quality of the evidence to support guideline development ⬇️

scientific article published on January 1, 2010

Confirm or refute?: A comparative study on citation sentiment classification in clinical research publications

scientific article published on 10 February 2019

Constructing a semantic predication gold standard from the biomedical literature

scientific article

Drug repurposing for COVID-19 via knowledge graph completion

scientific article published on 08 February 2021

Expanding vocabularies for complementary and alternative medicine therapies

scientific article published on 22 November 2018

Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs

scientific article

Impact of peer review on discussion of study limitations and strength of claims in randomized trial reports: a before and after study

scientific article published on 16 September 2019

Informatics Support for Basic Research in Biomedicine

scientific article

Integrating a hypernymic proposition interpreter into a semantic processor for biomedical texts.

scientific article published in January 2003

Interpreting hypernymic propositions in an online medical encyclopedia

scientific article

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing

scientific article published on 27 December 2018

Medical facts to support inferencing in natural language processing

scientific article

Menagerie: A text-mining tool to support animal-human translation in neurodegeneration research

scientific article published on 17 December 2019

Non-Negative Matrix Factorization for Drug Repositioning: Experiments with the repoDB Dataset

scientific article published on 01 January 2019

Proceedings of the 4th World Conference on Research Integrity

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective

scientific article

SemMedDB: a PubMed-scale repository of biomedical semantic predications ⬇️

scientific article published on October 8, 2012

Semantic annotation of consumer health questions

scientific article

Semantic relations asserting the etiology of genetic diseases

scientific article

Sortal anaphora resolution to enhance relation extraction from biomedical literature

scientific article

Summarization of an online medical encyclopedia

scientific article published in January 2004

Summarizing drug information in Medline citations.

scientific article published on January 2006

The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs

scientific article published on 26 June 2015

Toward assessing clinical trial publications for reporting transparency

scientific article published on 26 February 2021

Toward automatic recognition of high quality clinical evidence

scientific article

Towards a characterization of apparent contradictions in the biomedical literature using context analysis

scientific article published on 29 August 2019

Towards automatic recognition of scientifically rigorous clinical research evidence.

scientific article published on 24 October 2008

U-Compare bio-event meta-service: compatible BioNLP event extraction services

scientific article (publication date: 18 December 2011)

Using semantic predications to uncover drug-drug interactions in clinical data

scientific article

Using the literature-based discovery paradigm to investigate drug mechanisms

scientific article

Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment

scientific article

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