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List of works by Gary Stacey

14-3-3 proteins SGF14c and SGF14l play critical roles during soybean nodulation.

scientific article

A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis.

scientific article published on 8 February 2008

A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans

scientific article published on 07 April 2022

A Protein Domain Co-Occurrence Network Approach for Predicting Protein Function and Inferring Species Phylogeny ⬇️

scientific article published on March 24, 2011

A Soybean Acyl Carrier Protein, GmACP, Is Important for Root Nodule Symbiosis

scientific article published on 01 May 2014

A dual-targeted soybean protein is involved in Bradyrhizobium japonicum infection of soybean root hair and cortical cells

scientific article published on 01 September 2011

A lectin receptor-like kinase is required for pollen development in Arabidopsis

scientific article

A member of the highly conserved FWL (tomato FW2.2-like) gene family is essential for soybean nodule organogenesis

scientific article published on 10 March 2010

Activation of a mitogen-activated protein kinase pathway in Arabidopsis by chitin

scientific article published in March 2004

Activation of the plant mevalonate pathway by extracellular ATP

scientific article published on 21 January 2022

Activity-based metagenomic screening and biochemical characterization of bovine ruminal protozoan glycoside hydrolases

scientific article

Aequorin luminescence-based functional calcium assay for heterotrimeric G-proteins in Arabidopsis

scientific article published in January 2013

Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry

scientific article published on 12 March 2019

An Improved Transient Expression System Using Arabidopsis Protoplasts

scientific article published on 01 March 2016

An Oligonucleotide Microarray Resource for Transcriptional Profiling of Bradyrhizobium japonicum

article

An Oligopeptide Transporter Gene Family in Arabidopsis ⬇️

scientific article published on 01 January 2002

An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes.

scientific article published on 2 December 2014

An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

scientific article published on 7 April 2010

Arabidopsis E3 ubiquitin ligase PLANT U-BOX13 (PUB13) regulates chitin receptor LYSIN MOTIF RECEPTOR KINASE5 (LYK5) protein abundance

scientific article

Arabidopsis Lectin Receptor Kinase P2K2 is a second plant receptor for extracellular ATP and contributes to innate immunity

scientific article published on 28 April 2020

AtOPT3, a member of the oligopeptide transporter family, is essential for embryo development in Arabidopsis

scientific article published in November 2002

CRISPR/Cas9-Mediated Knockout of Galactinol Synthase-Encoding Genes Reduces Raffinose Family Oligosaccharide Levels in Soybean Seeds

scientific article published on 17 December 2020

Characterization of the Spatial and Temporal Expression of Two Soybean miRNAs Identifies SCL6 as a Novel Regulator of Soybean Nodulation

scientific article published in 2019

Chitin receptor CERK1 links salt stress and chitin-triggered innate immunity in Arabidopsis

scientific article published on 26 November 2016

Chitin signaling and plant disease resistance

scientific article published in October 2008

Comparative transcriptomic analysis of symbiotic Bradyrhizobium japonicum

article

Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection

scientific article published on 20 November 2009

Computational Analysis of the Ligand Binding Site of the Extracellular ATP Receptor, DORN1

scientific article

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

Corrigendum: Characterization of the Spatial and Temporal Expression of Two Soybean miRNAs Identifies SCL6 as a Novel Regulator of Soybean Nodulation

scientific article published on 01 January 2019

DNA Microarray-Based Identification of Genes Regulated by NtrC in Bradyrhizobium japonicum

scientific article published on 29 May 2015

Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules

scientific article

Demonstration of highly efficient dual gRNA CRISPR/Cas9 editing of the homeologous GmFAD2-1A and GmFAD2-1B genes to yield a high oleic, low linoleic and α-linolenic acid phenotype in soybean

scientific article published on 15 July 2019

Development and assessment of scoring functions for protein identification using PMF data

scientific article

Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria.

scientific article

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

scientific article

Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.

scientific article published on 20 January 2017

Diverse Bacterial Genes Modulate Plant Root Association by Beneficial Bacteria

scientific article published on 15 December 2020

Does plant immunity play a critical role during initiation of the legume-rhizobium symbiosis?

scientific article

Effect of lipo-chitooligosaccharide on early growth of C4 grass seedlings

scientific article published on 6 June 2015

Effects of endogenous salicylic acid on nodulation in the model legumes Lotus japonicus and Medicago truncatula

scientific article published on 23 June 2006

Enzymatic activity of the soybean ecto-apyrase GS52 is essential for stimulation of nodulation

scientific article published on 23 February 2011

Enzymatic role for soybean ecto-apyrase in nodulation ⬇️

scientific article published on July 1, 2011

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

scientific article published on 05 June 2013

Erratum: Genome sequence of the palaeopolyploid soybean

scientific article published in Nature

Establishment of a protein reference map for soybean root hair cells

scientific article published on 26 November 2008

Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository

scientific article

Ethylene-Responsive Element-Binding Factor 5, ERF5, Is Involved in Chitin-Induced Innate Immunity Response ⬇️

scientific article published on 01 January 2012

Evolution of FW2.2-like (FWL) and PLAC8 genes in eukaryotes

scientific article

Evolutionary dynamics of protein domain architecture in plants ⬇️

scientific article (publication date: 17 January 2012)

Evolutionary genomics of LysM genes in land plants

scientific article

Extracellular ATP acts as a damage-associated molecular pattern (DAMP) signal in plants

scientific article published on 03 September 2014

Extracellular ATP acts on jasmonate signaling to reinforce plant defense.

scientific article

Extracellular ATP elicits DORN1-mediated RBOHD phosphorylation to regulate stomatal aperture.

scientific article published on 22 December 2017

Extracellular ATP in plants. Visualization, localization, and analysis of physiological significance in growth and signaling

scientific article published on 08 September 2006

Extracellular ATP is a central signaling molecule in plant stress responses

scientific article (publication date: August 2014)

Extracellular ATP plays an important role in systemic wound response activation

scientific article published in 2022

Extracellular ATP signaling in plants

scientific article

Extracellular ATP, a danger signal, is recognized by DORN1 in Arabidopsis

scientific article

Extracellular nucleotides elicit cytosolic free calcium oscillations in Arabidopsis

scientific article published on 29 July 2010

GS52 ecto-apyrase plays a critical role during soybean nodulation

scientific article published on 26 November 2008

Generation of Phaseolus vulgaris ESTs and investigation of their regulation upon Uromyces appendiculatus infection

scientific article

Generation of Soybean (Glycine max) Transient Transgenic Roots

scientific article published on 01 May 2016

Genetic dissection of the maize (Zea mays L.) MAMP response.

scientific article

Genetic marker anchoring by six-dimensional pools for development of a soybean physical map

scientific article

Genetics and functional genomics of legume nodulation

scientific article

Genome sequence of the palaeopolyploid soybean

scientific article

Herbaspirillum rubrisubalbicans as a Phytopathogenic Model to Study the Immune System of Sorghum bicolor

scientific article published on 27 December 2019

High-Resolution Translatome Analysis Reveals Cortical Cell Programs During Early Soybean Nodulation

scientific article published on 14 April 2022

Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection.

scientific article published on 14 May 2015

Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.

scientific article published on August 2007

Identification of Homogentisate Dioxygenase as a Target for Vitamin E Biofortification in Oilseeds.

scientific article published on 22 September 2016

Identification of QTL for Target Leaf Spot resistance in Sorghum bicolor and investigation of relationships between disease resistance and variation in the MAMP response

scientific article published on 04 December 2019

Identification of Soybean Proteins and Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation

scientific article published on 09 September 2015

Identification of a plant receptor for extracellular ATP.

scientific article

Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation.

scientific article published on 17 March 2015

Identification of quantitative trait loci controlling gene expression during the innate immunity response of soybean ⬇️

scientific article published on 30 September 2011

Identification of soybean proteins from a single cell type: The root hair ⬇️

scientific article published on November 1, 2012

Importance of Poly-3-Hydroxybutyrate Metabolism to the Ability of Herbaspirillum seropedicae To Promote Plant Growth

article

In vivo Chemical Analysis of Plant Sap from the Xylem and Single Parenchymal Cells by Capillary Microsampling Electrospray Ionization Mass Spectrometry

scientific article published on 28 April 2020

In-Situ Metabolomic Analysis of Setaria viridis Roots Colonized by Beneficial Endophytic Bacteria

scientific article published on 06 December 2019

Interfacing whispering gallery mode optical microresonator biosensors with the plant defense elicitor chitin

scientific article

LIK1, a CERK1-interacting kinase, regulates plant immune responses in Arabidopsis

scientific article

LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis

scientific article

Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model

scientific article published on 03 March 2022

Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule development

scientific article published on 15 September 2009

Laser-ablation electrospray ionization mass spectrometry with ion mobility separation reveals metabolites in the symbiotic interactions of soybean roots and rhizobia.

scientific article published on 10 April 2017

Legume transcription factor genes: what makes legumes so special?

scientific article published on 02 September 2009

Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia.

scientific article

Lipochitooligosaccharide recognition: an ancient story

scientific article

Lipopolysaccharides trigger two successive bursts of reactive oxygen species at distinct cellular locations

scientific article published on 5 February 2018

Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum.

scientific article published on 27 May 2005

Metabolic Noise and Distinct Subpopulations Observed by Single Cell LAESI Mass Spectrometry of Plant Cells in situ

article

Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism

scientific article published on 15 May 2020

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

scientific article

Microarray analysis of chitin elicitation in Arabidopsis thaliana

scientific article

Molecular Mechanism of Plant Recognition of Extracellular ATP.

scientific article published on 25 October 2017

Molecular and chromosomal evidence for allopolyploidy in soybean

scientific article published on 15 July 2009

Molecular evolution of lysin motif-type receptor-like kinases in plants

scientific article published on 20 April 2007

Nonlegumes respond to rhizobial Nod factors by suppressing the innate immune response

scientific article published on 05 September 2013

Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange

scientific article published on 13 June 2018

Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean ⬇️

scientific article published on February 14, 2011

Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data

scientific article

Prediction of novel miRNAs and associated target genes in Glycine max.

scientific article

Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum

scientific article published in May 2005

Proteomic and Metabolomic Analysis of Azospirillum brasilense ntrC Mutant under High and Low Nitrogen Conditions

scientific article published on 25 October 2019

Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum

scientific article

Quantitative proteomic analysis of bean plants infected by a virulent and avirulent obligate rust fungus

scientific article published on 28 August 2008

Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells

scientific article

Robust biological nitrogen fixation in a model grass-bacterial association.

scientific article published in March 2015

Role of LysM receptors in chitin-triggered plant innate immunity.

scientific article

Root hair systems biology ⬇️

scientific article published on September 17, 2010

S-acylation of P2K1 mediates extracellular ATP-induced immune signaling in Arabidopsis

scientific article published on 12 May 2021

Selective Enrichment Coupled with Proteomics to Identify S-Acylated Plasma Membrane Proteins in Arabidopsis

scientific article published on 01 December 2020

Shoot to root communication is necessary to control the expression of iron-acquisition genes in Strategy I plants ⬇️

scientific article published on September 15, 2012

Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations

scientific article published on 21 April 2020

SoyCSN: Soybean context-specific network analysis and prediction based on tissue-specific transcriptome data

scientific article published on 17 September 2019

SoyDB: a knowledge database of soybean transcription factors

scientific article

SoyMetDB: The soybean metabolome database

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics

scientific article

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles

scientific article

Soybean Ureases, but Not That of Bradyrhizobium japonicum, Are Involved in the Process of Soybean Root Nodulation

article

Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding

scientific article (publication date: 2014)

Soybean metabolites regulated in root hairs in response to the symbiotic bacterium Bradyrhizobium japonicum

scientific article published on 9 June 2010

Soybean root hairs: a valuable system to investigate plant biology at the cellular level

scientific article published on 19 April 2010

Spatial Mapping of Plant <i>N</i>-Glycosylation Cellular Heterogeneity Inside Soybean Root Nodules Provided Insights Into Legume-Rhizobia Symbiosis

scientific article published on 16 May 2022

Statistical assessment for mass-spec protein identification using peptide fingerprinting approach

scientific article published on 01 January 2004

Survey sequencing of soybean elucidates the genome structure, composition and identifies novel repeats

scientific article published on 01 August 2006

System approaches to study root hairs as a single cell plant model: current status and future perspectives

scientific article

The GmFWL1 (FW2-2-like) nodulation gene encodes a plasma membrane microdomain-associated protein

scientific article

The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.

scientific article published on 22 April 2018

The Raf-like MAPKKK INTEGRIN-LINKED KINASE 5 regulates purinergic receptor-mediated innate immunity in Arabidopsis

scientific article published on 10 February 2023

The fate of duplicated genes in a polyploid plant genome ⬇️

scientific article published on October 22, 2012

The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1.

scientific article

The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72.

scientific article published on 28 November 2016

The role of microRNAs in the legume-Rhizobium nitrogen-fixing symbiosis

scientific article published on 01 March 2020

Tnt1 retrotransposon mutagenesis: a tool for soybean functional genomics

scientific article published in November 2012

Touch induces ATP release in Arabidopsis roots that is modulated by the heterotrimeric G-protein complex.

scientific article published on 15 July 2009

Transcription profiling of soybean nodulation by Bradyrhizobium japonicum

scientific article published in May 2008

Transcriptional and Physiological Responses of Bradyrhizobium japonicum to Desiccation-Induced Stress

article

Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress

scientific article

Two MATE proteins play a role in iron efficiency in soybean

scientific article

Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth.

scientific article published on 08 August 2008

Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls

scientific article

miR172 regulates soybean nodulation.

scientific article published in December 2013

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