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List of works by James T MacDonald

Cell-Free Protein Synthesis as a Prototyping Platform for Mammalian Synthetic Biology

scientific article published on 03 January 2020

Cell-free synthetic biology for in vitro prototype engineering

scientific article published on June 2017

Computational Sequence Design with R2oDNA Designer

scientific article published in January 2017

Computational design approaches and tools for synthetic biology ⬇️

scientific article published on January 24, 2011

Computational protein design with backbone plasticity

scientific article published on 19 October 2016

Delineation of metabolic gene clusters in plant genomes by chromatin signatures.

scientific article published on 18 February 2016

High–quality protein backbone reconstruction from alpha carbons using Gaussian mixture models ⬇️

scientific article published on May 24, 2013

One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy.

scientific article

R2oDNA designer: computational design of biologically neutral synthetic DNA sequences

scientific article

Rapid acquisition and model-based analysis of cell-free transcription-translation reactions from nonmodel bacteria.

scientific article published on 17 April 2018

Structural and mechanistic insight into the Listeria monocytogenes two-enzyme lipoteichoic acid synthesis system.

scientific article

Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis

scientific article

Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension

scientific article published on 29 August 2016

Validating a Coarse-Grained Potential Energy Function through Protein Loop Modelling

scientific article

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