List of works - Axel Janke

A Genomic Approach to Examine the Complex Evolution of Laurasiatherian Mammals ⬇️

scientific article published on December 2, 2011

A mitogenomic study on the phylogenetic position of snakes

scientific article published in 2006

A new genus and species of mud snake from Myanmar (Reptilia, Squamata, Homalopsidae)

scientific article

A range-wide synthesis and timeline for phylogeographic events in the red fox (Vulpes vulpes)

scientific article (publication date: 5 June 2013)

A sensitive and specific multiplex PCR approach for sex identification of ursine and tremarctine bears suitable for non-invasive samples.

scientific article

A taxonomic revision of the genus Phrynoglossus in Indochina with the description of a new species and comments on the classification within Occidozyginae (Amphibia, Anura, Dicroglossidae) ⬇️

Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow

scientific article

Brown and polar bear Y chromosomes reveal extensive male-biased gene flow within brother lineages

scientific article

Coalescent-based genome analyses resolve the early branches of the euarchontoglires.

scientific article

Cryptic population structuring and the role of the Isthmus of Tehuantepec as a gene flow barrier in the critically endangered Central American River Turtle

scientific article

Detection of SARS-CoV-2 in raw and treated wastewater in Germany - Suitability for COVID-19 surveillance and potential transmission risks

scientific article published on 18 August 2020

Disentangling the relationship of the Australian marsupial orders using retrotransposon and evolutionary network analyses

scientific article

Education in the genomics era: Generating high-quality genome assemblies in university courses

scientific article published on 01 June 2020

Establishing species-specific sexing markers suitable for non-invasive samples of species lacking genomic resources: an example using the highly endangered common hamster Cricetus cricetus

Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil

scientific article

Expansion of CORE-SINEs in the genome of the Tasmanian devil

scientific article (publication date: 6 May 2012)

Expressed sequence tags as a tool for phylogenetic analysis of placental mammal evolution

scientific article (publication date: 22 August 2007)

Extended mitogenomic phylogenetic analyses yield new insight into crocodylian evolution and their survival of the Cretaceous-Tertiary boundary ⬇️

scientific article (publication date: November 2007)

Gene flow analysis method, the D-statistic, is robust in a wide parameter space

scientific article

Genetic evidence supports a distinct lineage of American crocodile (Crocodylus acutus) in the Greater Antilles

scientific article published on 12 November 2018

Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes

scientific article

Genome-Wide Search Identifies 1.9 Mb from the Polar Bear Y Chromosome for Evolutionary Analyses

scientific article

Genomic resources and genetic diversity of captive lesser kudu (Tragelaphus imberbis).

scientific article

Gnathostome phylogenomics utilizing lungfish EST sequences

scientific article published on 24 November 2008

Housekeeping genes for phylogenetic analysis of eutherian relationships

scientific article (publication date: August 2006)

Identification and evaluation of novel di- and tetranucleotide microsatellite markers from the brown bear (Ursus arctos)

article by Oddmund Kleven et al published 18 April 2012 in Conservation Genetics Resources

Impact of carnivory on human development and evolution revealed by a new unifying model of weaning in mammals

scientific article (publication date: 2012)

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

scientific article

Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master's Course

scientific article published on 08 May 2020

Limited introgression supports division of giraffe into four species

article

Mammalian evolution may not be strictly bifurcating

scientific article (publication date: December 2010)

Mammalian mitogenomic relationships and the root of the eutherian tree

scientific article

Marsupial relationships and a timeline for marsupial radiation in South Gondwana.

scientific article

Matrilineal population structure and distribution of the Angolan giraffe in the Namib desert and beyond

article

Mitochondrial sequences reveal a clear separation between Angolan and South African giraffe along a cryptic rift valley

scientific article

Mitogenomic analyses of caniform relationships

scientific article

Mitogenomic analyses of deep gnathostome divergences: a fish is a fish

scientific article published on May 2004

Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians

scientific article

Mitogenomic analyses provide new insights into cetacean origin and evolution

scientific article published on May 2004

Mitogenomic relationships of placental mammals and molecular estimates of their divergences

scientific article

Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies

scientific article

Multi-locus Analyses Reveal Four Giraffe Species Instead of One

scientific article (publication date: September 2016)

Networks: expanding evolutionary thinking

scientific article published on 11 June 2013

Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage

scientific article

Phylogenetic Analysis of 18S rRNA and the Mitochondrial Genomes of the Wombat, Vombatus ursinus, and the Spiny Anteater, Tachyglossus aculeatus: Increased Support for the Marsupionta Hypothesis

article

Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes

scientific article published on 29 August 2017

Phylogenetic analysis of 1.5 Mbp and platypus EST data refute the Marsupionta hypothesis and unequivocally support Monotremata as sister group to Marsupialia/Placentalia

scholarly article by Morgan Kullberg et al published March 2008 in Zoologica Scripta

Phylogenetic analysis of kindlins suggests subfunctionalization of an ancestral unduplicated kindlin into three paralogs in vertebrates.

scientific article published on 22 March 2011

Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups

scientific article

Pinniped phylogeny and a new hypothesis for their origin and dispersal

scientific article

Radiation of extant marsupials after the K/T boundary: evidence from complete mitochondrial genomes

scientific article published on January 2003

Range-wide whole-genome resequencing of the brown bear reveals drivers of intraspecies divergence

scientific article published in 2023

Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations

scientific article

Response to "How many species of giraffe are there?"

scientific article published in February 2017

Response to comment on "Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage".

scientific article

Revisiting the Glires concept--phylogenetic analysis of nuclear sequences

scientific article published in August 2003

Screening for the ancient polar bear mitochondrial genome reveals low integration of mitochondrial pseudogenes (<i>numts</i>) in bears

scientific article published in 2017

Speciation and population divergence in a mutualistic seed dispersing bird

scientific article published on 09 May 2022

Speciation generates mosaic genomes in kangaroos

scientific article

The evolutionary history of bears is characterized by gene flow across species

scientific article

The impact of fossil calibrations, codon positions and relaxed clocks on the divergence time estimates of the native Australian rodents (Conilurini).

scientific article

The importance of data sampling and analysis in resolving crocodylian relationships

scientific article published on 23 May 2008

The mitochondrial genome of the pufferfish, Fugu rubripes, and ordinal teleostean relationships

scientific article published in August 2002

Two high-quality<i>de novo</i>genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)

scientific article published in 2021

Two new avian mitochondrial genomes (penguin and goose) and a summary of bird and reptile mitogenomic features

scientific article published in January 2003

Whole-genome analysis of giraffe supports four distinct species

scientific article

Whole-genome sequencing of the blue whale and other rorquals finds signatures for introgressive gene flow.

scientific article published on 4 April 2018

Y chromosome haplotype distribution of brown bears (Ursus arctos) in Northern Europe provides insight into population history and recovery

scientific article published on 10 December 2015

Y-chromosomal testing of brown bears (Ursus arctos): Validation of a multiplex PCR-approach for nine STRs suitable for fecal and hair samples

scientific article published on August 2015

List of works by Axel Janke

A Genomic Approach to Examine the Complex Evolution of Laurasiatherian Mammals ⬇️

A mitogenomic study on the phylogenetic position of snakes

A new genus and species of mud snake from Myanmar (Reptilia, Squamata, Homalopsidae)

A range-wide synthesis and timeline for phylogeographic events in the red fox (Vulpes vulpes)

A sensitive and specific multiplex PCR approach for sex identification of ursine and tremarctine bears suitable for non-invasive samples.

A taxonomic revision of the genus Phrynoglossus in Indochina with the description of a new species and comments on the classification within Occidozyginae (Amphibia, Anura, Dicroglossidae) ⬇️

Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow

Brown and polar bear Y chromosomes reveal extensive male-biased gene flow within brother lineages

Coalescent-based genome analyses resolve the early branches of the euarchontoglires.

Cryptic population structuring and the role of the Isthmus of Tehuantepec as a gene flow barrier in the critically endangered Central American River Turtle

Detection of SARS-CoV-2 in raw and treated wastewater in Germany - Suitability for COVID-19 surveillance and potential transmission risks

Disentangling the relationship of the Australian marsupial orders using retrotransposon and evolutionary network analyses

Education in the genomics era: Generating high-quality genome assemblies in university courses

Establishing species-specific sexing markers suitable for non-invasive samples of species lacking genomic resources: an example using the highly endangered common hamster Cricetus cricetus

Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil

Expansion of CORE-SINEs in the genome of the Tasmanian devil

Expressed sequence tags as a tool for phylogenetic analysis of placental mammal evolution

Extended mitogenomic phylogenetic analyses yield new insight into crocodylian evolution and their survival of the Cretaceous-Tertiary boundary ⬇️

Gene flow analysis method, the D-statistic, is robust in a wide parameter space

Genetic evidence supports a distinct lineage of American crocodile (Crocodylus acutus) in the Greater Antilles

Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes

Genome-Wide Search Identifies 1.9 Mb from the Polar Bear Y Chromosome for Evolutionary Analyses

Genomic resources and genetic diversity of captive lesser kudu (Tragelaphus imberbis).

Gnathostome phylogenomics utilizing lungfish EST sequences

Housekeeping genes for phylogenetic analysis of eutherian relationships

Identification and evaluation of novel di- and tetranucleotide microsatellite markers from the brown bear (Ursus arctos)

Impact of carnivory on human development and evolution revealed by a new unifying model of weaning in mammals

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master's Course

Limited introgression supports division of giraffe into four species

Mammalian evolution may not be strictly bifurcating

Mammalian mitogenomic relationships and the root of the eutherian tree

Marsupial relationships and a timeline for marsupial radiation in South Gondwana.

Matrilineal population structure and distribution of the Angolan giraffe in the Namib desert and beyond

Mitochondrial sequences reveal a clear separation between Angolan and South African giraffe along a cryptic rift valley

Mitogenomic analyses of caniform relationships

Mitogenomic analyses of deep gnathostome divergences: a fish is a fish

Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians

Mitogenomic analyses provide new insights into cetacean origin and evolution

Mitogenomic relationships of placental mammals and molecular estimates of their divergences

Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies

Multi-locus Analyses Reveal Four Giraffe Species Instead of One

Networks: expanding evolutionary thinking

Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage

Phylogenetic Analysis of 18S rRNA and the Mitochondrial Genomes of the Wombat, Vombatus ursinus, and the Spiny Anteater, Tachyglossus aculeatus: Increased Support for the Marsupionta Hypothesis

Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes

Phylogenetic analysis of 1.5 Mbp and platypus EST data refute the Marsupionta hypothesis and unequivocally support Monotremata as sister group to Marsupialia/Placentalia

Phylogenetic analysis of kindlins suggests subfunctionalization of an ancestral unduplicated kindlin into three paralogs in vertebrates.

Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups

Pinniped phylogeny and a new hypothesis for their origin and dispersal

Radiation of extant marsupials after the K/T boundary: evidence from complete mitochondrial genomes

Range-wide whole-genome resequencing of the brown bear reveals drivers of intraspecies divergence

Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations

Response to "How many species of giraffe are there?"

Response to comment on "Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage".

Revisiting the Glires concept--phylogenetic analysis of nuclear sequences

Screening for the ancient polar bear mitochondrial genome reveals low integration of mitochondrial pseudogenes (<i>numts</i>) in bears

Speciation and population divergence in a mutualistic seed dispersing bird

Speciation generates mosaic genomes in kangaroos

The evolutionary history of bears is characterized by gene flow across species

The impact of fossil calibrations, codon positions and relaxed clocks on the divergence time estimates of the native Australian rodents (Conilurini).

The importance of data sampling and analysis in resolving crocodylian relationships

The mitochondrial genome of the pufferfish, Fugu rubripes, and ordinal teleostean relationships

Two high-quality<i>de novo</i>genomes from single ethanol-preserved specimens of tiny metazoans (Collembola)

Two new avian mitochondrial genomes (penguin and goose) and a summary of bird and reptile mitogenomic features

Whole-genome analysis of giraffe supports four distinct species

Whole-genome sequencing of the blue whale and other rorquals finds signatures for introgressive gene flow.

Y chromosome haplotype distribution of brown bears (Ursus arctos) in Northern Europe provides insight into population history and recovery

Y-chromosomal testing of brown bears (Ursus arctos): Validation of a multiplex PCR-approach for nine STRs suitable for fecal and hair samples