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List of works by Takumi Noguchi

Activity Regulation of Photoreactive Nitrile Hydratase by Nitric Oxide

scientific article published in 1997

Analysis of flash-induced FTIR difference spectra of the S-state cycle in the photosynthetic water-oxidizing complex by uniform 15N and 13C isotope labeling

scientific article published on 01 May 2003

Biological approaches to artificial photosynthesis, fundamental processes and theoretical approaches: general discussion

scientific article published in June 2017

Catalytic Mechanism of Nitrile Hydratase Proposed by Time-resolved X-ray Crystallography Using a Novel Substrate, tert-Butylisonitrile

scientific article

Characterization of highly purified photosystem I complexes from the chlorophyll d-dominated cyanobacterium Acaryochloris marina MBIC 11017.

scientific article published on 5 May 2008

Comparative Analysis of the Interaction of the Primary Quinone QA in Intact and Mn-Depleted Photosystem II Membranes Using Light-Induced ATR-FTIR Spectroscopy

scientific article published on 14 November 2016

Criteria for determining the hydrogen-bond structures of a tyrosine side chain by fourier transform infrared spectroscopy: density functional theory analyses of model hydrogen-bonded complexes of p-cresol

scientific article published on 20 November 2007

D1-Asn-298 in photosystem II is involved in a hydrogen-bond network near the redox-active tyrosine YZ for proton exit during water oxidation

scientific article

Density functional theory calculations on the dielectric constant dependence of the oxidation potential of chlorophyll: implication for the high potential of P680 in photosystem II.

scientific article published in June 2005

Determination of the miss probabilities of individual S-state transitions during photosynthetic water oxidation by monitoring electron flow in photosystem II using FTIR spectroscopy

scientific article published on 17 August 2012

Development of a novel cryogenic microscope with numerical aperture of 0.9 and its application to photosynthesis research.

scientific article

Does the water-oxidizing Mn4CaO5 cluster regulate the redox potential of the primary quinone electron acceptor QA in photosystem II? A study by Fourier transform infrared spectroelectrochemistry

scientific article published on 25 October 2019

Drastic changes in the ligand structure of the oxygen-evolving Mn cluster upon Ca2+ depletion as revealed by FTIR difference spectroscopy

scientific article published on 07 November 2006

Effect of a single-amino acid substitution of the 43 kDa chlorophyll protein on the oxygen-evolving reaction of the cyanobacterium Synechocystis sp. PCC 6803: analysis of the Glu354Gln mutation.

scientific article published in July 2009

Effect of charge distribution over a chlorophyll dimer on the redox potential of P680 in photosystem II as studied by density functional theory calculations

scientific article published on 24 May 2008

Effects of extrinsic proteins on the protein conformation of the oxygen-evolving center in cyanobacterial photosystem II as revealed by Fourier transform infrared spectroscopy

scientific article published on 12 March 2015

Energetics in photosystem II from Thermosynechococcus elongatus with a D1 protein encoded by either the psbA1 or psbA3 gene.

scientific article published on 31 March 2010

Evaluation of photosynthetic activities in thylakoid membranes by means of Fourier transform infrared spectroscopy

scientific article published on 22 November 2017

FTIR Microspectroscopic Analysis of the Water Oxidation Reaction in a Single Photosystem II Microcrystal

scientific article published on 24 December 2019

FTIR detection of water reactions during the flash-induced S-state cycle of the photosynthetic water-oxidizing complex

scientific article published on 01 December 2002

FTIR evidence that the PsbP extrinsic protein induces protein conformational changes around the oxygen-evolving Mn cluster in photosystem II.

scientific article published in July 2009

FTIR study on the hydrogen bond structure of a key tyrosine residue in the flavin-binding blue light sensor TePixD from Thermosynechococcus elongatus

scientific article published on 12 May 2007

Fate determination of the flavin photoreceptions in the cyanobacterial blue light receptor TePixD (Tll0078).

scientific article published on 4 August 2006

Flash-induced FTIR difference spectra of the water oxidizing complex in moderately hydrated photosystem II core films: effect of hydration extent on S-state transitions

scientific article published in February 2002

Flash-induced FTIR difference spectroscopy shows no evidence for the structural coupling of bicarbonate to the oxygen-evolving Mn cluster in photosystem II.

scientific article published on 25 January 2008

Fluorescence property of photosystem II protein complexes bound to a gold nanoparticle

scientific article published on 8 March 2017

Formation of the High-Spin S2 State Related to the Extrinsic Proteins in the Oxygen Evolving Complex of Photosystem II

scientific article published on 29 September 2020

Fourier Transform Infrared Analysis of the S-State Cycle of Water Oxidation in the Microcrystals of Photosystem II

scientific article published on 23 April 2018

Fourier transform infrared and mass spectrometry analyses of a site-directed mutant of D1-Asp170 as a ligand to the water-oxidizing Mn4CaO5 cluster in photosystem II

scientific article published on 31 October 2019

Fourier transform infrared detection of a polarizable proton trapped between photooxidized tyrosine YZ and a coupled histidine in photosystem II: relevance to the proton transfer mechanism of water oxidation

scientific article published on 7 May 2014

Fourier transform infrared spectrum of the secondary quinone electron acceptor Q(B) in photosystem II.

scientific article published in August 2005

Functional Roles of D2-Lys317 and the Interacting Chloride Ion in the Water Oxidation Reaction of Photosystem II As Revealed by Fourier Transform Infrared Analysis ⬇️

scientific article published on July 16, 2013

Genetically introduced hydrogen bond interactions reveal an asymmetric charge distribution on the radical cation of the special-pair chlorophyll P680.

scientific article published on 16 March 2017

Herbicide effect on the hydrogen-bonding interaction of the primary quinone electron acceptor QA in photosystem II as studied by Fourier transform infrared spectroscopy

scientific article published on 19 April 2008

Herbicide effect on the photodamage process of photosystem II: fourier transform infrared study

scientific article published on 28 June 2011

How does the QB site influence propagate to the QA site in photosystem II?

scientific article published on 23 May 2011

Hydrogen bond interactions of the pheophytin electron acceptor and its radical anion in photosystem II as revealed by Fourier transform infrared difference spectroscopy

scientific article published in January 2010

Identification of the basic amino acid residues on the PsbP protein involved in the electrostatic interaction with photosystem II

scientific article published on 02 January 2014

Identification of the special pair of photosystem II in a chlorophyll d-dominated cyanobacterium.

scholarly article

Influence of histidine-198 of the D1 subunit on the properties of the primary electron donor, P680, of photosystem II in Thermosynechococcus elongatus

scientific article

Infrared Detection of a Proton Released from Tyrosine YD to the Bulk upon Its Photo-oxidation in Photosystem II.

scientific article published on 4 August 2015

Infrared Determination of the Protonation State of a Key Histidine Residue in the Photosynthetic Water Oxidizing Center

scientific article published on 21 June 2017

Interaction and inhibitory effect of ammonium cation in the oxygen evolving center of photosystem II.

scientific article published on 3 March 2011

LOV-like flavin-Cys adduct formation by introducing a Cys residue in the BLUF domain of TePixD.

scientific article

Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.

scientific article

Long-range interaction between the Mn4CaO5 cluster and the non-heme iron center in photosystem II as revealed by FTIR spectroelectrochemistry

scientific article published on 25 July 2014

Mechanism of Methanol Inhibition of Photosynthetic Water Oxidation As Studied by Fourier Transform Infrared Difference and Time-Resolved Infrared Spectroscopies

scientific article published on 26 July 2018

Mechanism of Proton-Coupled Electron Transfer in the S-to-S Transition of Photosynthetic Water Oxidation As Revealed by Time-Resolved Infrared Spectroscopy

scientific article published on 05 October 2018

Modified molecular interactions of the pheophytin and plastoquinone electron acceptors in photosystem II of chlorophyll D-containing Acaryochloris marina as revealed by FTIR spectroscopy

scientific article published on 06 January 2015

Molecular Structure of the S2 State with a g = 5 Signal in the Oxygen Evolving Complex of Photosystem II

scientific article published on 12 June 2020

Molecular interactions of the quinone electron acceptors QA, QB, and QC in photosystem II as studied by the fragment molecular orbital method ⬇️

scientific article published on 04 December 2012

Monitoring proton release during photosynthetic water oxidation in photosystem II by means of isotope-edited infrared spectroscopy

scientific article published in June 2009

Monitoring the Reaction Process During the S2 → S3 Transition in Photosynthetic Water Oxidation Using Time-Resolved Infrared Spectroscopy

scientific article published on 16 January 2017

Monitoring water reactions during the S-state cycle of the photosynthetic water-oxidizing center: detection of the DOD bending vibrations by means of Fourier transform infrared spectroscopy

scientific article published on 27 September 2008

Mutation-induced perturbation of the special pair P840 in the homodimeric reaction center in green sulfur bacteria

scientific article published on 25 January 2016

New insights on ChlD1 function in Photosystem II from site-directed mutants of D1/T179 in Thermosynechococcus elongatus

scientific article published on 29 January 2019

Orientations of carboxylate groups coupled to the Mn cluster in the photosynthetic oxygen-evolving center as studied by polarized ATR-FTIR spectroscopy

scientific article published on 01 April 2010

Oxygen evolution in the thylakoid-lacking cyanobacterium Gloeobacter violaceus PCC 7421

scientific article published on 11 February 2008

Perturbation of the Structure of P680 and the Charge Distribution on Its Radical Cation in Isolated Reaction Center Complexes of Photosystem II as Revealed by Fourier Transform Infrared Spectroscopy†

scientific article published in 2007

Proton Release Process during the S2-to-S3 Transition of Photosynthetic Water Oxidation As Revealed by the pH Dependence of Kinetics Monitored by Time-Resolved Infrared Spectroscopy

scientific article published on 09 October 2019

Protonation State of a Key Histidine Ligand in the Iron-Quinone Complex of Photosystem II as Revealed by Light-Induced ATR-FTIR Spectroscopy

scientific article published on 04 November 2020

Protonation structure of the photosynthetic water oxidizing complex in the S0 state as revealed by normal mode analysis using quantum mechanics/molecular mechanics calculations

scientific article published on 21 October 2020

Protonation structures of Cys-sulfinic and Cys-sulfenic acids in the photosensitive nitrile hydratase revealed by Fourier transform infrared spectroscopy.

scientific article published in October 2003

Quantum mechanics/molecular mechanics simulation of the ligand vibrations of the water-oxidizing Mn4CaO5 cluster in photosystem II.

scientific article published on 11 October 2016

Redox potential of the terminal quinone electron acceptor QB in photosystem II reveals the mechanism of electron transfer regulation

scientific article

Redox properties and regulatory mechanism of the iron-quinone electron acceptor in photosystem II as revealed by FTIR spectroelectrochemistry

scientific article published on 05 January 2022

Redox-state dependent blinking of single photosystem I trimers at around liquid-nitrogen temperature

scientific article published on 11 November 2018

Role of a Water Network around the Mn4CaO5 Cluster in Photosynthetic Water Oxidation: A Fourier Transform Infrared Spectroscopy and Quantum Mechanics/Molecular Mechanics Calculation Study

scientific article

Role of the O4 Channel in Photosynthetic Water Oxidation as Revealed by Fourier Transform Infrared Difference and Time-Resolved Infrared Analysis of the D1-S169A Mutant

scientific article published on 18 February 2020

Selective detection of the structural changes upon photoreactions of several redox cofactors in photosystem II by means of light-induced ATR-FTIR difference spectroscopy

scientific article published on 26 July 2006

Site-directed mutagenesis of Thermosynechococcus elongatus photosystem II: the O2-evolving enzyme lacking the redox-active tyrosine D.

scientific article published in October 2004

Structural Coupling of Extrinsic Proteins with the Oxygen-Evolving Center in Photosystem II

scientific article

Structural Dynamics of a Protein Domain Relevant to the Water-Oxidizing Complex in Photosystem II as Visualized by High-Speed Atomic Force Microscopy

scientific article published on 17 June 2020

Structural coupling of a tyrosine side chain with the non-heme iron center in photosystem II as revealed by light-induced Fourier transform infrared difference spectroscopy

scientific article published in September 2009

Structural coupling of an arginine side chain with the oxygen-evolving Mn4Ca cluster in photosystem II as revealed by isotope-edited Fourier transform infrared spectroscopy

scientific article published on 24 February 2011

Structural coupling of extrinsic proteins with the oxygen-evolving center in red algal photosystem II as revealed by light-induced FTIR difference spectroscopy

scientific article published on 14 August 2013

Structural perturbation of the carboxylate ligands to the manganese cluster upon Ca2+/Sr2+ exchange in the S-state cycle of photosynthetic oxygen evolution as studied by flash-induced FTIR difference spectroscopy

scholarly article by Hiroyuki Suzuki et al published 14 November 2006 in Biochemistry

Structure-Based Modeling of Fluorescence Kinetics of Photosystem II: Relation between Its Dimeric Form and Photoregulation

scientific article

Structures and binding sites of phenolic herbicides in the Q(B) pocket of photosystem II.

scientific article published in July 2010

The N-terminal sequence of the extrinsic PsbP protein modulates the redox potential of Cyt b559 in photosystem II

scientific article published on 18 February 2016

The PsbQ protein stabilizes the functional binding of the PsbP protein to photosystem II in higher plants

scientific article published on 25 January 2012

The conserved His-144 in the PsbP protein is important for the interaction between the PsbP N-terminus and the Cyt b559 subunit of photosystem II

scientific article published on 15 June 2012

The cyanobacteriochrome, TePixJ, isomerizes its own chromophore by converting phycocyanobilin to phycoviolobilin

scientific article published on 24 January 2011

Thermal equilibrium of two conformations in photosensitive nitrile hydratase probed by the FTIR band of nitric oxide bound to the non-heme iron center

scientific article

Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II in Thermosynechococcus elongatus

scientific article published on 03 August 2018

Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile

scientific article

Time-Resolved Infrared Detection of the Proton and Protein Dynamics during Photosynthetic Oxygen Evolution ⬇️

scientific article published on 04 April 2012

Water molecules coupled to the redox-active tyrosine Y(D) in photosystem II as detected by FTIR spectroscopy

scientific article published on 13 November 2007

pH dependence of the flash-induced S-state transitions in the oxygen-evolving center of photosystem II from Thermosynechoccocus elongatus as revealed by Fourier transform infrared spectroscopy

scientific article

pH-Dependent regulation of the relaxation rate of the radial anion of the secondary quinone electron acceptor QB in photosystem II as revealed by Fourier transform infrared spectroscopy.

scientific article published on 20 April 2018

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