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List of works by Ryan R Wick

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

scientific article published on 07 July 2021

Badread: simulation of error-prone long reads

scientific article published on 03 April 2019

Benchmarking of long-read assemblers for prokaryote whole genome sequencing

scientific article published on 23 December 2019

Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece

scientific article published on 10 October 2019

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

scientific article published on 20 November 2018

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

scientific article published on 23 October 2019

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

scientific article published on 15 April 2019

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

scientific article published on 06 April 2020

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

scientific article published on 01 March 2019

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1

article

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

scientific article published on 31 May 2022

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

scientific article

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

scientific article published on 30 May 2016

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clones 1 and 2

scientific article published on 01 October 2019

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes.

scientific article

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

scientific article published on 29 June 2018

Performance of neural network basecalling tools for Oxford Nanopore sequencing

scientific article published on 24 June 2019

Polypolish: Short-read polishing of long-read bacterial genome assemblies

scientific article published on 24 January 2022

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward

scientific article

Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258

scientific article published on 26 February 2019

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

scientific article

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