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List of works by Daniel M Gatti

A large-scale genome-lipid association map guides lipid identification

scientific article published on 21 September 2020

A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2

scientific article

Author Correction: Defining the consequences of genetic variation on a proteome-wide scale

correction of a scholarly article

Automatic discovery of clinically interpretable imaging biomarkers for Mycobacterium tuberculosis supersusceptibility using deep learning

scientific article published on 06 November 2020

Block network mapping approach to quantitative trait locus analysis

scientific article

CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice

scientific article published on 17 August 2021

Cleaning Genotype Data from Diversity Outbred Mice

scientific article published on 07 May 2019

Cleaning genotype data from Diversity Outbred mice

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens

scientific article published on 12 June 2017

Correction to: Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size

scientific article published on 01 February 2019

Cross-Species Analyses Identify Dlgap2 as a Regulator of Age-Related Cognitive Decline and Alzheimer's Dementia

scientific article published on 01 September 2020

Defining the consequences of genetic variation on a proteome-wide scale.

scientific article published on 15 June 2016

Developmental constraint through negative pleiotropy in the zygomatic arch.

scientific article published on 27 January 2018

Diet dominates host genotype in shaping the murine gut microbiota

scientific article

Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity.

scientific article

Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection.

scientific article published on 30 September 2016

Doxorubicin-Induced Cardiotoxicity in Collaborative Cross (CC) Mice Recapitulates Individual Cardiotoxicity in Humans

scientific article published on 08 August 2019

Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice.

scientific article

Erratum: "Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity"

scientific article published on 27 June 2018

FastMap: fast eQTL mapping in homozygous populations.

scientific article published on 17 December 2008

Gene loci associated with insulin secretion in islets from non-diabetic mice

scientific article published on 25 July 2019

Genetic Architectures of Quantitative Variation in RNA Editing Pathways

scientific article published on 27 November 2015

Genetic Drivers of Pancreatic Islet Function

article

Genetic Fine-Mapping and Identification of Candidate Genes and Variants for Adiposity Traits in Outbred Rats.

scientific article published on 28 November 2017

Genetic Regulation of Female Sexual Maturation and Longevity Through Circulating IGF1

scientific article

Genetic determinants of gut microbiota composition and bile acid profiles in mice

scientific article published on 29 August 2019

Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response

scientific article published on 01 August 2019

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

scientific article

Genome-level analysis of genetic regulation of liver gene expression networks

scientific article

Genome-wide association for testis weight in the diversity outbred mouse population.

scientific article published on 24 April 2018

Heading down the wrong pathway: on the influence of correlation within gene sets

scientific article

High-Resolution Genetic Mapping Using the Mouse Diversity Outbred Population ⬇️

scientific article published on February 1, 2012

High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis

scientific article

High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains

scientific article published on 19 February 2020

Identification of a novel microRNA profile in pediatric patients with cancer treated with anthracycline chemotherapy

scientific article published on 24 August 2018

Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice.

scientific article

Mapping Complex Traits in a Diversity Outbred F1 Mouse Population Identifies Germline Modifiers of Metastasis in Human Prostate Cancer

scientific article published on 25 November 2016

Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency

scientific article published on 07 August 2020

MicroRNA expression in the livers of inbred mice

scientific article

Mouse Genome-Wide Association and Systems Genetics Identifies Lhfp as a Regulator of Bone Mass

scientific article published on 29 October 2018

Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass.

scientific article

Nine quick tips for efficient bioinformatics curriculum development and training

scientific article published on 23 July 2020

Nitrosative stress and lipid homeostasis as a mechanism for zileuton hepatotoxicity and resistance in genetically sensitive mice

scientific article published on 14 March 2020

Population-based discovery of toxicogenomics biomarkers for hepatotoxicity using a laboratory strain diversity panel

scientific article published on 06 May 2009

Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene

scientific article

QTLViewer: an interactive webtool for genetic analysis in the Collaborative Cross and Diversity Outbred mouse populations

scientific article published in 2022

Quantitative trait locus mapping methods for diversity outbred mice

scientific article

Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size

scientific article published on 26 December 2017

R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent Populations

article

R/qtl2: software for mapping quantitative trait loci with high dimensional data and multi-parent populations

R2d2 Drives Selfish Sweeps in the House Mouse

scientific article published on 15 February 2016

RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.

scientific article

Rapid identification of major-effect genes using the collaborative cross

scientific article

Replication and narrowing of gene expression quantitative trait loci using inbred mice

scientific article published on 17 July 2009

SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy

scientific article

Sensitivity to hepatotoxicity due to epigallocatechin gallate is affected by genetic background in diversity outbred mice

scientific article

Sex-specific gene expression in the BXD mouse liver

scientific article

Structural Variation Shapes the Landscape of Recombination in Mouse.

scientific article published on June 2017

The Diversity Outbred mouse population.

scientific article

Time-course comparison of xenobiotic activators of CAR and PPARalpha in mouse liver

scientific article published on 24 December 2008

Toxicogenetics: population-based testing of drug and chemical safety in mouse models

scientific article

Use of integrated imaging and serum biomarker profiles to identify subclinical dysfunction in pediatric cancer patients treated with anthracyclines

scientific article published in May 2018

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