List of works - Ryuhei Harada

Common folding processes of mini-proteins: Partial formations of secondary structures initiate the immediate protein folding.

scientific article published on 13 February 2017

Efficient Conformational Sampling of Collective Motions of Proteins with Principal Component Analysis-Based Parallel Cascade Selection Molecular Dynamics

scientific article published on 13 August 2020

Efficient Conformational Search Based on Structural Dissimilarity Sampling: Applications for Reproducing Structural Transitions of Proteins.

scientific article published on 7 February 2017

Hybrid Cascade-Type Molecular Dynamics with a Markov State Model for Efficient Free Energy Calculations

scientific article published on 07 December 2018

Independent Nontargeted Parallel Cascade Selection Molecular Dynamics (Ino-PaCS-MD) to Enhance the Conformational Sampling of Proteins

scientific article published on 19 August 2021

Molecular Mechanism of the Reaction Specificity in Threonine Synthase: Importance of the Substrate Conformations

scientific article published on 10 May 2017

Nontargeted Parallel Cascade Selection Molecular Dynamics Based on a Nonredundant Selection Rule for Initial Structures Enhances Conformational Sampling of Proteins

scientific article published on 21 November 2019

Nontargeted Parallel Cascade Selection Molecular Dynamics Using Time-Localized Prediction of Conformational Transitions in Protein Dynamics

scientific article published on 27 August 2019

On-the-Fly Specifications of Reaction Coordinates in Parallel Cascade Selection Molecular Dynamics Accelerate Conformational Transitions of Proteins.

scientific article

Protein Dynamics and the Folding Degree

scientific article published on 24 February 2020

Selection Rules for Outliers in Outlier Flooding Method Regulate Its Conformational Sampling Efficiency

scientific article published on 28 August 2019

Self-Avoiding Conformational Sampling Based on Histories of Past Conformational Searches.

scientific article published on 7 November 2017

Structural dissimilarity sampling with dynamically self-guiding selection.

scientific article published on 30 May 2017

Temperature-Shuffled Structural Dissimilarity Sampling Based on a Root-Mean-Square Deviation

scientific article published on 26 June 2018

Temperature-pressure shuffling outlier flooding method enhances the conformational sampling of proteins

scientific article published on 28 February 2019

Temperature-shuffled parallel cascade selection molecular dynamics accelerates the structural transitions of proteins.

scientific article published on 31 August 2017

List of works by Ryuhei Harada