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List of works by Rafael C Bernardi

Cybershuttle: An End-to-End Cyberinfrastructure Continuum to Accelerate Discovery in Science and Engineering

scientific article published on 10 September 2023

Direction Matters: Monovalent Streptavidin/Biotin Complex under Load

scientific article published on 26 October 2018

Enhanced sampling techniques in molecular dynamics simulations of biological systems

scientific article

Fire forbids fifty-fifty forest

scientific article

Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories

scientific article published on 01 October 2020

High force catch bond mechanism of bacterial adhesion in the human gut

scientific article published on 28 August 2020

Livestock Herbivory Shapes Fire Regimes and Vegetation Structure Across the Global Tropics

scientific article

Mapping Mechanical Force Propagation through Biomolecular Complexes

scientific article

Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy

scientific article published on 09 September 2019

Molecular dynamics study of enhanced Man5B enzymatic activity

scientific article (publication date: 2014)

Molecular mechanism of extreme mechanostability in a pathogen adhesin.

scientific article published in March 2018

NAMD goes quantum: an integrative suite for hybrid simulations

scientific article published on 26 March 2018

PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent Interactions in MD Simulations

scientific article published in February 2018

QwikMD - Integrative Molecular Dynamics Toolkit for Novices and Experts

scientific article

Scalable molecular dynamics on CPU and GPU architectures with NAMD ⬇️

scientific article published on 01 July 2020

Streptavidin/biotin: Tethering geometry defines unbinding mechanics

scientific article published on 25 March 2020

Why are forests so scarce in subtropical South America? The shaping roles of climate, fire and livestock

scientific article published in 2016

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