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List of works by Sophia Kossida

'Brukin2D': a 2D visualization and comparison tool for LC-MS data

scientific article published on 16 June 2009

3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target

scientific article published on 25 September 2013

3D structural analysis of proteins using electrostatic surfaces based on image segmentation

scientific article published on 28 February 2014

A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase

scientific article published on 7 May 2013

AmalgamScope: merging annotations data across the human genome.

scientific article

An integrated in silico approach to design specific inhibitors targeting human poly(a)-specific ribonuclease

scientific article

Analysis of secreted proteins for the study of bladder cancer cell aggressiveness

scientific article

Antibody Drug Conjugate bioinformatics: drug delivery through the letterbox

scientific article published on 19 June 2013

Antiviral Stratagems Against HIV-1 Using RNA Interference (RNAi) Technology

scientific article published on 16 May 2013

Computational Construction of Antibody-Drug Conjugates Using Surface Lysines as the Antibody Conjugation Site and a Non-cleavable Linker

scientific article

Current state-of-the-art molecular dynamics methods and applications.

scientific article

Cytosine Methyltransferases as Tumor Markers

scientific article published on December 1, 2010

Design, synthesis and application of benzyl-sulfonate biomimetic affinity adsorbents for monoclonal antibody purification from transgenic corn.

scientific article

Directed evolution of Tau class glutathione transferases reveals a site that regulates catalytic efficiency and masks co-operativity

scientific article

Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles

scientific article

Everolimus suppresses cancellous bone loss, bone resorption, and cathepsin K expression by osteoclasts

scientific article

Evolution of the F0F1 ATP synthase complex in light of the patchy distribution of different bioenergetic pathways across prokaryotes

scientific article

Fusion methodologies for biomedical data

scientific article

GIBA: a clustering tool for detecting protein complexes

scientific article published on 16 June 2009

Gene fusion analysis in the battle against the African endemic sleeping sickness

scientific article

Human gene correlation analysis (HGCA): a tool for the identification of transcriptionally co-expressed genes

scientific article

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application.

scientific article

IMGT/Collier-de-Perles: a two-dimensional visualization tool for amino acid domain sequences

scientific article published on 21 February 2013

Molecular cloning of SLC26A7, a novel member of the SLC26 sulfate/anion transporter family, from high endothelial venules and kidney

scientific article (publication date: February 2002)

Molecular dynamics simulations through GPU video games technologies

scientific article published on 30 June 2014

Molecular modeling and pharmacophore elucidation study of the Classical Swine Fever virus helicase as a promising pharmacological target.

scientific article published on 11 June 2013

Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme

scientific article

On integrating multi-experiment microarray data

scientific article

Protein functional links in Trypanosoma brucei, identified by gene fusion analysis.

scientific article

Protein signatures using electrostatic molecular surfaces in harmonic space.

scientific article published on 22 October 2013

Proteomics-driven progress in neurodegeneration research

scientific article

SAFE Software and FED Database to Uncover Protein-Protein Interactions using Gene Fusion Analysis.

scientific article published on 18 December 2011

Sample preparation and bioinformatics in MALDI profiling of urinary proteins

scientific article

Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe

scientific article

Sp1 binds to the external promoter of the p73 gene and induces the expression of TAp73gamma in lung cancer

scientific article published on 07 June 2010

Space constrained homology modelling: the paradigm of the RNA-dependent RNA polymerase of dengue (type II) virus.

scientific article

State-of-the-art technology in modern computer-aided drug design.

scientific article

Structural models for the design of novel antiviral agents against Greek Goat Encephalitis

scientific article

The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community

scientific article

The THAP domain: a novel protein motif with similarity to the DNA-binding domain of P element transposase

scientific article (publication date: February 2003)

The future of structural bioinformatics in the post-genomic era

Transcriptome map of mouse isochores in embryonic and neonatal cortex.

scientific article

Transcriptome map of mouse isochores.

scientific article

Unraveling microalgal molecular interactions using evolutionary and structural bioinformatics

scientific article published on 28 July 2013

Using graph theory to analyze biological networks

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Which clustering algorithm is better for predicting protein complexes?

scientific article

e-Herophilus: 24-hour personalised telecardiology services.

scientific article