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List of works by Shalev Itzkovitz

A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease

scientific article published on 07 June 2017

A comprehensive library of fluorescent transcriptional reporters for Escherichia coli

scientific article published in August 2006

A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells

scientific article published on 13 July 2016

A critical role for the Wnt effector Tcf4 in adult intestinal homeostatic self-renewal

scientific article

A single cell atlas of the human liver tumor microenvironment

scientific article published on 01 December 2020

A systematic view on influenza induced host shutoff.

scientific article published on 15 August 2016

A universal mechanism ties genotype to phenotype in trinucleotide diseases

scientific article (publication date: November 2007)

A versatile genome-scale PCR-based pipeline for high-definition DNA FISH.

scientific article

Aging, clonal hematopoiesis and preleukemia: not just bad luck?

scientific article published on 06 October 2015

Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues

scientific article

Author Correction: Subepithelial telocytes are an important source of Wnts that supports intestinal crypts

scientific article published in Nature

Bursting through the cell cycle

scientific article published on 7 March 2016

Bursty gene expression in the intact mammalian liver

scientific article

Casein kinase 1-epsilon or 1-delta required for Wnt-mediated intestinal stem cell maintenance.

scientific article published on 28 September 2017

Cell lineage analysis of a mouse tumor

scientific article

Cell lineage analysis of the mammalian female germline

scientific article

Clump sequencing exposes the spatial expression programs of intestinal secretory cells

scientific article published on 24 May 2021

Coarse-graining and self-dissimilarity of complex networks

scientific article published on 21 January 2005

Coding limits on the number of transcription factors

scientific article published on 19 September 2006

Colon stem cell and crypt dynamics exposed by cell lineage reconstruction

scientific article published in July 2011

Design principles of the paradoxical feedback between pancreatic alpha and beta cells

Diet Diurnally Regulates Small Intestinal Microbiome-Epithelial-Immune Homeostasis and Enteritis

scientific article published on 02 September 2020

Diversion of aspartate in ASS1-deficient tumours fosters de novo pyrimidine synthesis

scientific article published on 11 November 2015

Dynamic zonation of liver polyploidy

scientific article published on 15 June 2016

Early commitment and robust differentiation in colonic crypts ⬇️

scientific article published on 03 January 2017

Erratum: Single-cell spatial reconstruction reveals global division of labour in the mammalian liver

scientific article published on 15 March 2017

Estimating cell depth from somatic mutations

scientific article

Functional atlas of the integrin adhesome

scientific article (publication date: August 2007)

Functional consequences of necdin nucleocytoplasmic localization.

scientific article published on 19 March 2012

Genetic and phenotypic diversity in breast tumor metastases

scientific article published on 21 January 2014

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS

scientific article published on 02 November 2020

Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code

scholarly article

Global mRNA polarization regulates translation efficiency in the intestinal epithelium.

scientific article

Inference of tumor evolution during chemotherapy by computational modeling and in situ analysis of genetic and phenotypic cellular diversity

scientific article published on 23 January 2014

Invariant distribution of promoter activities in Escherichia coli

scientific article published on 23 October 2009

Lactate released by inflammatory bone marrow neutrophils induces their mobilization via endothelial GPR81 signaling

scientific article published on 15 July 2020

Lgr5+ telocytes are a signaling source at the intestinal villus tip

scientific article published on 22 April 2020

Liver zonation

scientific article published on 11 December 2020

Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting

scientific article published on 11 October 2018

Microglia development follows a stepwise program to regulate brain homeostasis

scientific article published on 23 June 2016

Multiparametric analysis of focal adhesion formation by RNAi-mediated gene knockdown

scientific article

Muscle-bound primordial stem cells give rise to myofiber-associated myogenic and non-myogenic progenitors

scientific article (publication date: 2011)

Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction

scholarly article

Nuclear Retention of mRNA in Mammalian Tissues

scientific article

Optimality in the development of intestinal crypts

scientific article published on February 2012

Oscillations and variability in the p53 system

scientific article

Overlapping codes within protein-coding sequences

scientific article

Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells

article

Pax6 regulation ofSox9in the mouse retinal pigmented epithelium controls its timely differentiation and choroid vasculature development

article

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features

scientific article published on 01 September 2018

Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration

scientific article published on 09 August 2018

Population mixture model for nonlinear telomere dynamics

scientific article published on 23 December 2008

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT

scientific article published on 01 September 2018

Protein Networks in Integrin-Mediated Adhesions

Protocol for Single-Molecule Fluorescence In Situ Hybridization for Intact Pancreatic Tissue

scientific article published on 03 June 2020

Quantitative digital in situ senescence-associated β-galactosidase assay ⬇️

scientific article

Reconstruction of cell lineage trees in mice

scientific article

Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma

scientific article published on 06 December 2018

Single molecule approaches for quantifying transcription and degradation rates in intact mammalian tissues

scientific article published on 20 November 2015

Single molecule approaches for studying gene regulation in metabolic tissues

scientific article published on 01 September 2018

Single-Cell Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for Generating Antigen-Specific Immunity

scientific article published on 13 February 2019

Single-cell mapping of the thymic stroma identifies IL-25-producing tuft epithelial cells

scientific article published in Nature

Single-cell spatial reconstruction reveals global division of labour in the mammalian liver

scientific article published on 6 February 2017

Single-molecule mRNA detection and counting in mammalian tissue.

scientific article

Single-molecule transcript counting of stem-cell markers in the mouse intestine

scientific article published on 27 November 2011

Slug and Sox9 cooperatively determine the mammary stem cell state

scientific article

Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis

Spatial discordances between mRNAs and proteins in the intestinal epithelium

scientific article published on 20 December 2021

Spatial gene expression maps of the intestinal lymphoid follicle and associated epithelium identify zonated expression programs

scientific article published on 11 October 2021

Spatial heterogeneity in the mammalian liver

scientific article published on 01 July 2019

Spatial sorting enables comprehensive characterization of liver zonation

scientific article published on 16 September 2019

Spatial transcriptomics: paving the way for tissue-level systems biology

scientific article published on 24 March 2017

Subepithelial telocytes are an important source of Wnts that supports intestinal crypts

scientific article published in Nature

Subgraphs and network motifs in geometric networks

scientific article published on 22 February 2005

Subgraphs in random networks ⬇️

scientific article published on August 25, 2003

Superfamilies of evolved and designed networks.

scientific article

Telomere elongation followed by telomere length reduction, in leukocytes from divers exposed to intense oxidative stress--implications for tissue and organismal aging

scientific article published on 12 February 2011

The Druze: a population genetic refugium of the Near East

scientific article

The Genetic Program of Pancreatic β-Cell Replication In Vivo

scientific article published on 18 March 2016

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers

scientific article published on 12 June 2012

The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome

scientific article

The genetic code is nearly optimal for allowing additional information within protein-coding sequences

scientific article published on 9 February 2007

Transcriptional Heterogeneity of Beta Cells in the Intact Pancreas

scientific article published on 29 November 2018

Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity

scientific article

Validating transcripts with probes and imaging technology

scientific article published on 30 March 2011

Zonation of Pancreatic Acinar Cells in Diabetic Mice

scientific article published on 01 August 2020

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