List of works - Nickolas Papadopoulos

A combination of molecular markers and clinical features improve the classification of pancreatic cysts

scientific article

A multidimensional analysis of genes mutated in breast and colorectal cancers

scientific article

A multimodality test to guide the management of patients with a pancreatic cyst

scientific article published on 01 July 2019

A novel approach for selecting combination clinical markers of pathology applied to a large retrospective cohort of surgically resected pancreatic cysts

scientific article published on 21 June 2016

A panel of isogenic human cancer cells suggests a therapeutic approach for cancers with inactivated p53

scientific article

ATM mutations in patients with hereditary pancreatic cancer

scientific article published on 29 December 2011

Alpha-1 adrenergic receptor antagonists for preventing acute respiratory distress syndrome and death from cytokine storm syndrome

scientific article published on 21 April 2020

Altered telomeres in tumors with ATRX and DAXX mutations

scientific article

An engineered antibody fragment targeting mutant β-catenin via major histocompatibility complex I neoantigen presentation

scientific article published on 05 November 2019

Applications of liquid biopsies for cancer

scientific article published on 01 August 2019

Aristolochic Acid in the Etiology of Renal Cell Carcinoma

scientific article published on 23 August 2016

Assessing aneuploidy with repetitive element sequencing

scientific article published on 19 February 2020

Association of the autoimmune disease scleroderma with an immunologic response to cancer

scientific article published on 5 December 2013

Bisulfite-converted duplexes for the strand-specific detection and quantification of rare mutations

scientific article

Cancer genome landscapes

scientific article

Cancer-Associated Mutations in Endometriosis without Cancer.

scientific article published on May 2017

Circulating tumor DNA analysis detects minimal residual disease and predicts recurrence in patients with stage II colon cancer

scientific article

Clinical, genomic, and metagenomic characterization of oral tongue squamous cell carcinoma in patients who do not smoke

scientific article

Combined circulating tumor DNA and protein biomarker-based liquid biopsy for the earlier detection of pancreatic cancers

scientific article published on 5 September 2017

Comparative genomic analysis of esophageal adenocarcinoma and squamous cell carcinoma

scientific article

Core signaling pathways in human pancreatic cancers revealed by global genomic analyses

scientific article

Correction to: persistent mutant oncogene specific T cells in two patients benefitting from anti-PD-1

article

Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy

article

DAXX/ATRX, MEN1, and mTOR pathway genes are frequently altered in pancreatic neuroendocrine tumors

scientific article

DETECTION OF CIRCULATING TUMOR DNA IN EARLY AND LATE STAGE HUMAN MALIGNANCIES.

scientific article published in July 2014

Detection and localization of surgically resectable cancers with a multi-analyte blood test.

scientific article published on 18 January 2018

Detection of TERT promoter mutations in primary adenocarcinoma of the urinary bladder

scientific article published on 10 March 2016

Detection of aneuploidy in patients with cancer through amplification of long interspersed nucleotide elements (LINEs).

scientific article published on 5 February 2018

Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing

scientific article

Detection of circulating tumor DNA in early- and late-stage human malignancies

scientific article (publication date: 19 February 2014)

Detection of somatic TP53 mutations in tampons of patients with high-grade serous ovarian cancer

scientific article

Detection of somatic mutations and HPV in the saliva and plasma of patients with head and neck squamous cell carcinomas

scientific article

Detection of tumor-derived DNA in cerebrospinal fluid of patients with primary tumors of the brain and spinal cord

scientific article

Diagnostic potential of tumor DNA from ovarian cyst fluid

scientific article published on 15 July 2016

Direct Detection and Quantification of Neoantigens

scientific article published on 16 September 2019

Disruption of a self-amplifying catecholamine loop reduces cytokine release syndrome.

scientific article

Eradication of metastatic mouse cancers resistant to immune checkpoint blockade by suppression of myeloid-derived cells

scientific article

Evaluating the evaluation of cancer driver genes

scientific article

Evaluation of DNA from the Papanicolaou test to detect ovarian and endometrial cancers

scientific article

Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers.

scientific article published in March 2018

Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas

scientific article

Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1

scientific article (publication date: 26 August 2011)

Exomic analysis of myxoid liposarcomas, synovial sarcomas, and osteosarcomas

scientific article

Exomic sequencing of four rare central nervous system tumor types

scientific article published on April 2013

Exomic sequencing of medullary thyroid cancer reveals dominant and mutually exclusive oncogenic mutations in RET and RAS.

scientific article published on 21 December 2012

FAST-SeqS: A Simple and Efficient Method for the Detection of Aneuploidy by Massively Parallel Sequencing ⬇️

scientific article published on July 18, 2012

Familial and sporadic pancreatic cancer share the same molecular pathogenesis

scientific article

Feasibility of blood testing combined with PET-CT to screen for cancer and guide intervention

scientific article published on 28 April 2020

Frequent ATRX, CIC, FUBP1 and IDH1 mutations refine the classification of malignant gliomas

scientific article

Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma

scientific article

Generation of MANAbodies specific to HLA-restricted epitopes encoded by somatically mutated genes

scientific article published on 27 July 2015

Genetic inactivation of AKT1, AKT2, and PDPK1 in human colorectal cancer cells clarifies their roles in tumor growth regulation

scientific article

Genetic landscape of extreme responders with anaplastic oligodendroglioma

scientific article

Genome-wide quantification of rare somatic mutations in normal human tissues using massively parallel sequencing

scientific article

Genomic analysis identifies frequent deletions of Dystrophin in olfactory neuroblastoma

scientific article published in Nature Communications

Glucose deprivation contributes to the development of KRAS pathway mutations in tumor cells

scientific article

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells

scientific article

High prevalence of TERT promoter mutations in micropapillary urothelial carcinoma

scientific article

High prevalence of TERT promoter mutations in primary squamous cell carcinoma of the urinary bladder

scientific article

IgH gene rearrangements as plasma biomarkers in Non- Hodgkin's lymphoma patients

scientific article

Integrated genomic analyses identify ARID1A and ARID1B alterations in the childhood cancer neuroblastoma

scientific article

Intraductal papillary mucinous neoplasm in a neonate with congenital hyperinsulinism and a de novo germline SKIL gene mutation

scientific article

Intratumoral injection of Clostridium novyi-NT spores induces antitumor responses

scientific article

Lavage of the Uterine Cavity for Molecular Detection of Müllerian Duct Carcinomas: A Proof-of-Concept Study

scientific article

Limited detection of IgH gene rearrangements in plasma of patients with primary central nervous system lymphoma ⬇️

scientific article published on July 5, 2013

Limited heterogeneity of known driver gene mutations among the metastases of individual patients with pancreatic cancer

scientific article published on 16 January 2017

Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway

scientific article

Low-grade serous carcinomas of the ovary contain very few point mutations

scientific article

Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade.

scientific article

Mutational signature of aristolochic acid exposure as revealed by whole-exome sequencing

scientific article

Mutations in CIC and FUBP1 contribute to human oligodendroglioma

scientific article (publication date: 9 September 2011)

Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy.

scientific article published on 20 March 2018

PD-1 Blockade in Tumors with Mismatch-Repair Deficiency

scientific article

Performance of novel non-invasive urine assay UroSEEK in cohorts of equivocal urine cytology

scientific article published on 03 September 2019

Persistent mutant oncogene specific T cells in two patients benefitting from anti-PD-1

article

Precancerous neoplastic cells can move through the pancreatic ductal system

scientific article published in Nature

Preventing cytokine storm syndrome in COVID-19 using α-1 adrenergic receptor antagonists

scientific article published on 30 April 2020

Prognostic Potential of Circulating Tumor DNA Measurement in Postoperative Surveillance of Nonmetastatic Colorectal Cancer

scientific article published on 09 May 2019

Recurrent GNAS mutations define an unexpected pathway for pancreatic cyst development

scientific article

Selected reaction monitoring approach for validating peptide biomarkers

scientific article published on 4 December 2017

Sensitive digital quantification of DNA methylation in clinical samples

scientific article

Serial Assessment of Human Tumor Burdens in Mice by the Analysis of Circulating DNA

article

Somatic mutations in the chromatin remodeling gene ARID1A occur in several tumor types

scientific article

Somatic mutations in the transcriptional corepressor gene BCORL1 in adult acute myelogenous leukemia ⬇️

scientific article published on October 11, 2011

Somatic mutations of SUZ12 in malignant peripheral nerve sheath tumors

scientific article published on 12 October 2014

Spectrum of genetic mutations in de novo PUNLMP of the urinary bladder

scientific article

Structural engineering of chimeric antigen receptors targeting HLA-restricted neoantigens

scientific article published on 06 September 2021

TCR β chain-directed bispecific antibodies for the treatment of T cell cancers

scientific article published on 01 March 2021

TERT promoter mutations occur early in urothelial neoplasia and are biomarkers of early disease and disease recurrence in urine

scientific article published on 11 October 2013

TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal

scientific article published on 25 March 2013

Targeted sequencing of plasmacytoid urothelial carcinoma reveals frequent TERT promoter mutations

scientific article published on 14 November 2018

Targeting the catecholamine-cytokine axis to prevent SARS-CoV-2 cytokine storm syndrome

scientific article published on 08 April 2020

The antisense transcriptomes of human cells

scientific article

The consensus coding sequences of human breast and colorectal cancers

scientific article

The early detection of pancreatic cancer: what will it take to diagnose and treat curable pancreatic neoplasia?

scientific article

The genomic landscapes of human breast and colorectal cancers

scientific article

The potential role of circulating tumor DNA (ctDNA) in the further investigation of colorectal cancer patients with nonspecific findings on standard investigations

scientific article published on 24 January 2019

The role of companion diagnostics in the development and use of mutation-targeted cancer therapies

scientific article published on August 2006

The vigorous immune microenvironment of microsatellite instable colon cancer is balanced by multiple counter-inhibitory checkpoints

scientific article

The vigorous immune microenvironment of microsatellite instable colon cancer is balanced by multiple counter-inhibitory checkpoints

Ultrasensitive detection of tumor-specific mutations in saliva of patients with oral cavity squamous cell carcinoma

scientific article published on 21 December 2020

Very Long-term Survival Following Resection for Pancreatic Cancer Is Not Explained by Commonly Mutated Genes: Results of Whole-Exome Sequencing Analysis

scientific article

Whole Genome Sequencing Defines the Genetic Heterogeneity of Familial Pancreatic Cancer

scientific article published on 9 December 2015

Whole-Exome Sequencing Analyses of Inflammatory Bowel Disease-Associated Colorectal Cancers

scientific article published on 04 January 2016

Whole-Genome Sequencing of Salivary Gland Adenoid Cystic Carcinoma

scientific article

Whole-exome sequencing of neoplastic cysts of the pancreas reveals recurrent mutations in components of ubiquitin-dependent pathways

scientific article published on 8 December 2011

Whole-exome sequencing of pancreatic neoplasms with acinar differentiation

scientific article

List of works by Nickolas Papadopoulos

A combination of molecular markers and clinical features improve the classification of pancreatic cysts

A multidimensional analysis of genes mutated in breast and colorectal cancers

A multimodality test to guide the management of patients with a pancreatic cyst

A novel approach for selecting combination clinical markers of pathology applied to a large retrospective cohort of surgically resected pancreatic cysts

A panel of isogenic human cancer cells suggests a therapeutic approach for cancers with inactivated p53

ATM mutations in patients with hereditary pancreatic cancer

Alpha-1 adrenergic receptor antagonists for preventing acute respiratory distress syndrome and death from cytokine storm syndrome

Altered telomeres in tumors with ATRX and DAXX mutations

An engineered antibody fragment targeting mutant β-catenin via major histocompatibility complex I neoantigen presentation

Applications of liquid biopsies for cancer

Aristolochic Acid in the Etiology of Renal Cell Carcinoma

Assessing aneuploidy with repetitive element sequencing

Association of the autoimmune disease scleroderma with an immunologic response to cancer

Bisulfite-converted duplexes for the strand-specific detection and quantification of rare mutations

Cancer genome landscapes

Cancer-Associated Mutations in Endometriosis without Cancer.

Circulating tumor DNA analysis detects minimal residual disease and predicts recurrence in patients with stage II colon cancer

Clinical, genomic, and metagenomic characterization of oral tongue squamous cell carcinoma in patients who do not smoke

Combined circulating tumor DNA and protein biomarker-based liquid biopsy for the earlier detection of pancreatic cancers

Comparative genomic analysis of esophageal adenocarcinoma and squamous cell carcinoma

Core signaling pathways in human pancreatic cancers revealed by global genomic analyses

Correction to: persistent mutant oncogene specific T cells in two patients benefitting from anti-PD-1

Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy

DAXX/ATRX, MEN1, and mTOR pathway genes are frequently altered in pancreatic neuroendocrine tumors

DETECTION OF CIRCULATING TUMOR DNA IN EARLY AND LATE STAGE HUMAN MALIGNANCIES.

Detection and localization of surgically resectable cancers with a multi-analyte blood test.

Detection of TERT promoter mutations in primary adenocarcinoma of the urinary bladder

Detection of aneuploidy in patients with cancer through amplification of long interspersed nucleotide elements (LINEs).

Detection of chromosomal alterations in the circulation of cancer patients with whole-genome sequencing

Detection of circulating tumor DNA in early- and late-stage human malignancies

Detection of somatic TP53 mutations in tampons of patients with high-grade serous ovarian cancer

Detection of somatic mutations and HPV in the saliva and plasma of patients with head and neck squamous cell carcinomas

Detection of tumor-derived DNA in cerebrospinal fluid of patients with primary tumors of the brain and spinal cord

Diagnostic potential of tumor DNA from ovarian cyst fluid

Direct Detection and Quantification of Neoantigens

Disruption of a self-amplifying catecholamine loop reduces cytokine release syndrome.

Eradication of metastatic mouse cancers resistant to immune checkpoint blockade by suppression of myeloid-derived cells

Evaluating the evaluation of cancer driver genes

Evaluation of DNA from the Papanicolaou test to detect ovarian and endometrial cancers

Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers.

Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas

Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1

Exomic analysis of myxoid liposarcomas, synovial sarcomas, and osteosarcomas

Exomic sequencing of four rare central nervous system tumor types

Exomic sequencing of medullary thyroid cancer reveals dominant and mutually exclusive oncogenic mutations in RET and RAS.

FAST-SeqS: A Simple and Efficient Method for the Detection of Aneuploidy by Massively Parallel Sequencing ⬇️

Familial and sporadic pancreatic cancer share the same molecular pathogenesis

Feasibility of blood testing combined with PET-CT to screen for cancer and guide intervention

Frequent ATRX, CIC, FUBP1 and IDH1 mutations refine the classification of malignant gliomas

Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma

Generation of MANAbodies specific to HLA-restricted epitopes encoded by somatically mutated genes

Genetic inactivation of AKT1, AKT2, and PDPK1 in human colorectal cancer cells clarifies their roles in tumor growth regulation

Genetic landscape of extreme responders with anaplastic oligodendroglioma

Genome-wide quantification of rare somatic mutations in normal human tissues using massively parallel sequencing

Genomic analysis identifies frequent deletions of Dystrophin in olfactory neuroblastoma

Glucose deprivation contributes to the development of KRAS pathway mutations in tumor cells

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells

High prevalence of TERT promoter mutations in micropapillary urothelial carcinoma

High prevalence of TERT promoter mutations in primary squamous cell carcinoma of the urinary bladder

IgH gene rearrangements as plasma biomarkers in Non- Hodgkin's lymphoma patients

Integrated genomic analyses identify ARID1A and ARID1B alterations in the childhood cancer neuroblastoma

Intraductal papillary mucinous neoplasm in a neonate with congenital hyperinsulinism and a de novo germline SKIL gene mutation

Intratumoral injection of Clostridium novyi-NT spores induces antitumor responses

Lavage of the Uterine Cavity for Molecular Detection of Müllerian Duct Carcinomas: A Proof-of-Concept Study

Limited detection of IgH gene rearrangements in plasma of patients with primary central nervous system lymphoma ⬇️

Limited heterogeneity of known driver gene mutations among the metastases of individual patients with pancreatic cancer

Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway

Low-grade serous carcinomas of the ovary contain very few point mutations

Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade.

Mutational signature of aristolochic acid exposure as revealed by whole-exome sequencing

Mutations in CIC and FUBP1 contribute to human oligodendroglioma

Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy.

PD-1 Blockade in Tumors with Mismatch-Repair Deficiency

Performance of novel non-invasive urine assay UroSEEK in cohorts of equivocal urine cytology

Persistent mutant oncogene specific T cells in two patients benefitting from anti-PD-1

Precancerous neoplastic cells can move through the pancreatic ductal system

Preventing cytokine storm syndrome in COVID-19 using α-1 adrenergic receptor antagonists

Prognostic Potential of Circulating Tumor DNA Measurement in Postoperative Surveillance of Nonmetastatic Colorectal Cancer

Recurrent GNAS mutations define an unexpected pathway for pancreatic cyst development