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List of works by Daniel Gianola

A Bayesian approach for constructing genetic maps when markers are miscoded

scientific article published in May 2002

A Benchmarking Between Deep Learning, Support Vector Machine and Bayesian Threshold Best Linear Unbiased Prediction for Predicting Ordinal Traits in Plant Breeding

article

A GWAS assessment of the contribution of genomic imprinting to the variation of body mass index in mice

scientific article published on 5 August 2015

A Mixed Effects Model for Overdispersed Count Data in Animal Breeding

article

A Multiple-Trait Bayesian Lasso for Genome-Enabled Analysis and Prediction of Complex Traits

scientific article published on 26 December 2019

A Thurstonian model for quantitative genetic analysis of ranks: a Bayesian approach

scientific article

A certain invariance property of BLUE in a whole-genome regression context

scientific article published on 07 January 2019

A comparison between Poisson and zero-inflated Poisson regression models with an application to number of black spots in Corriedale sheep

scientific article published on 17 June 2008

A comprehensive genetic approach for improving prediction of skin cancer risk in humans

scientific article

A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number

scientific article (publication date: March 2014)

A high resolution genome-wide scan for significant selective sweeps: an application to pooled sequence data in laying chickens

scientific article (publication date: 2012)

A non-parametric mixture model for genome-enabled prediction of genetic value for a quantitative trait ⬇️

scientific article published on August 25, 2010

A periodic analysis of longitudinal binary responses: a case study of clinical mastitis in Norwegian Red cows

scientific article published on 14 April 2007

A predictive assessment of genetic correlations between traits in chickens using markers.

scientific article

A primer on high-throughput computing for genomic selection

scientific article (publication date: 2011)

A robust Bayesian genome-based median regression model

scientific article published on 12 February 2019

A two-step method for detecting selection signatures using genetic markers

scientific article published on April 2010

A whole-genome analysis using robust asymmetric distributions

scientific article published on 01 December 2006

Accuracy of Genome-Enabled Prediction in a Dairy Cattle Population using Different Cross-Validation Layouts.

scientific article published on 28 February 2012

Additive genetic variability and the Bayesian alphabet

scientific article published on 20 July 2009

An ensemble-based approach to imputation of moderate-density genotypes for genomic selection with application to Angus cattle

scientific article

Application of neural networks with back-propagation to genome-enabled prediction of complex traits in Holstein-Friesian and German Fleckvieh cattle

scientific article

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle.

scientific article

Application of support vector regression to genome-assisted prediction of quantitative traits

scientific article published on 8 July 2011

Applications of Machine Learning Methods to Genomic Selection in Breeding Wheat for Rust Resistance

scientific article published on 01 July 2018

Assessing genomic prediction accuracy for Holstein sires using bootstrap aggregation sampling and leave-one-out cross validation

scientific article published on 23 November 2016

Attenuating effects of preferential treatment with Student-mixed linear models: a simulation study

article published in 1998

Bayesian Inference on Variance and Covariance Components for Traits Influenced by Maternal and Direct Genetic Effects, Using the Gibbs Sampler

scientific article published on 02 July 2009

Bayesian Networks Illustrate Genomic and Residual Trait Connections in Maize (Zea mays L.).

scientific article published on 21 June 2017

Bayesian analysis of additive epistasis arising from new mutations in mice.

scientific article published on 13 August 2014

Bayesian analysis of lifetime performance and prolificacy in Landrace sows using a linear mixed model with censoring

scholarly article

Bayesian genomic-enabled prediction as an inverse problem

scientific article

Bayesian joint mapping of quantitative trait loci for Gaussian and categorical characters in line crosses.

scientific article published on 27 June 2008

Bayesian model averaging for evaluation of candidate gene effects.

scientific article published on 5 January 2010

Bayesian structural equation models for inferring relationships between phenotypes: a review of methodology, identifiability, and applications

scientific article published on February 2010

Combining gene expression and molecular marker information for mapping complex trait genes: a simulation study

scientific article

Comparison between linear and non-parametric regression models for genome-enabled prediction in wheat

scientific article published on December 2012

Comparison of classification methods for detecting associations between SNPs and chick mortality

scientific article published on 23 January 2009

Conceptual framework for investigating causal effects from observational data in livestock

scientific article published on 01 September 2018

Contribution of an additive locus to genetic variance when inheritance is multi-factorial with implications on interpretation of GWAS.

scientific article published on 19 March 2013

Cross-Validation Without Doing Cross-Validation in Genome-Enabled Prediction.

scientific article published on 3 August 2016

Deep Kernel and Deep Learning for Genome-Based Prediction of Single Traits in Multienvironment Breeding Trials

scientific article published on 09 December 2019

Deep learning versus parametric and ensemble methods for genomic prediction of complex phenotypes

scientific article published on 24 February 2020

Defining window-boundaries for genomic analyses using smoothing spline techniques

scientific article

Differential contribution of genomic regions to marked genetic variation and prediction of quantitative traits in broiler chickens.

scientific article published on 3 February 2016

Do Molecular Markers Inform About Pleiotropy?

scientific article

Effect of genotype imputation on genome-enabled prediction of complex traits: an empirical study with mice data

scientific article

Enhancing genome-enabled prediction by bagging genomic BLUP.

scientific article

Evaluation of linkage disequilibrium in wheat with an L1-regularized sparse Markov network

scientific article published on 10 May 2013

Evaluation of models for somatic cell score lactation patterns in Holsteins ⬇️

scholarly article

Exploration of lagged relationships between mastitis and milk yield in dairy cows using a Bayesian structural equation Gaussian-threshold model

scientific article published on 17 June 2008

Exploring biological relationships between calving traits in primiparous cattle with a Bayesian recursive model

scientific article

Factor analysis models for structuring covariance matrices of additive genetic effects: a Bayesian implementation

scientific article published on 27 September 2007

Genetic variation of lactation curves in dairy sheep: a Bayesian analysis of Wood’s function

scholarly article

Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and Arabidopsis.

scientific article

Genome-assisted prediction of a quantitative trait measured in parents and progeny: application to food conversion rate in chickens

scientific article published on 5 January 2009

Genome-enabled prediction of quantitative traits in chickens using genomic annotation.

scientific article

Genome-enabled prediction using probabilistic neural network classifiers

scientific article

Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture

scientific article

Genomic heritability: what is it?

scientific article published on 5 May 2015

Genomic mating as sustainable breeding for Chinese indigenous Ningxiang pigs

scientific article published on 14 August 2020

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R.

scientific article

Genomic-assisted prediction of genetic value with semiparametric procedures

scientific article

Humble Thanks to a Gentle Giant (an Obituary for James F. Crow).

scientific article

Improving reliability of genomic predictions for Jersey sires using bootstrap aggregation sampling

scientific article

Including Phenotypic Causal Networks in Genome-Wide Association Studies Using Mixed Effects Structural Equation Models

scholarly article by Mehdi Momen et al published 2018 in Frontiers in Genetics

Incorporating parent-of-origin effects in whole-genome prediction of complex traits

scientific article published on 18 April 2016

Inferring causal phenotype networks using structural equation models

scientific article published on 10 February 2011

Inferring genetic values for quantitative traits non-parametrically.

scientific article published in December 2008

Inferring parameters shaping amino acid usage in prokaryotic genomes via Bayesian MCMC methods

scientific article

Inferring trait-specific similarity among individuals from molecular markers and phenotypes with Bayesian regression

scientific article published on 09 December 2019

Integration of single nucleotide variants and whole-genome DNA methylation profiles for classification of rheumatoid arthritis cases from controls

scientific article published on 03 March 2020

Is structural equation modeling advantageous for the genetic improvement of multiple traits?

scientific article published on 22 April 2013

It is unlikely that genomic selection will ever be 100% accurate

scientific article published in December 2017

Joint Use of Genome, Pedigree, and Their Interaction with Environment for Predicting the Performance of Wheat Lines in New Environments

scientific article published on 04 September 2019

Kernel-based variance component estimation and whole-genome prediction of pre-corrected phenotypes and progeny tests for dairy cow health traits

scientific article published on 24 March 2014

Kernel-based whole-genome prediction of complex traits: a review

scientific article published on 16 October 2014

L2-Boosting algorithm applied to high-dimensional problems in genomic selection.

scientific article

Long-term impacts of genome-enabled selection.

scientific article published on 17 May 2011

Longitudinal random effects models for genetic analysis of binary data with application to mastitis in dairy cattle

scientific article

Machine Learning Prediction of Crossbred Pig Feed Efficiency and Growth Rate From Single Nucleotide Polymorphisms

scientific article published on 18 December 2020

Marker-assisted prediction of non-additive genetic values

scientific article

Meta-analysis of candidate gene effects using bayesian parametric and non-parametric approaches

scientific article published on 2 January 2014

Mixed effects linear models with t-distributions for quantitative genetic analysis: a Bayesian approach.

scientific article published on 15 January 1999

Mixture model for inferring susceptibility to mastitis in dairy cattle: a procedure for likelihood-based inference

scientific article published on January 2004

Modeling relationships between calving traits: a comparison between standard and recursive mixed models

scientific article

Multi-environment Genomic Prediction of Plant Traits Using Deep Learners with Dense Architecture

article

Multi-trait, Multi-environment Deep Learning Modeling for Genomic-Enabled Prediction of Plant Traits

article

Multivariate Bayesian analysis of Gaussian, right censored Gaussian, ordered categorical and binary traits using Gibbs sampling

scientific article published on March 2003

New Deep Learning Genomic-Based Prediction Model for Multiple Traits with Binary, Ordinal, and Continuous Phenotypes

scientific article published on 07 May 2019

Nonparametric methods for incorporating genomic information into genetic evaluations: an application to mortality in broilers.

scientific article published on April 2008

On marker-assisted prediction of genetic value: beyond the ridge

scientific article

On measures of association among genetic variables

scientific article published on July 2012

On the quantitative genetics of mixture characters

scientific article

One hundred years of statistical developments in animal breeding

scientific article

Parallel Markov chain Monte Carlo - bridging the gap to high-performance Bayesian computation in animal breeding and genetics

scientific article (publication date: 25 September 2012)

Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat

scientific article

Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data

scientific article

Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models

scientific article published on 11 September 2013

Predicting genetic predisposition in humans: the promise of whole-genome markers

scientific article

Predicting quantitative traits with regression models for dense molecular markers and pedigree

scientific article published on 16 March 2009

Prediction of Complex Traits: Robust Alternatives to Best Linear Unbiased Prediction.

scientific article published on 5 June 2018

Prediction of Plant Height in Arabidopsis thaliana Using DNA Methylation Data

scientific article

Prediction of body mass index in mice using dense molecular markers and a regularized neural network.

scientific article published on 12 April 2011

Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers.

scientific article

Predictive ability of genome-assisted statistical models under various forms of gene action

scientific article published in Scientific Reports

Priors in whole-genome regression: the bayesian alphabet returns

scientific article published on May 2013

Quantitative genetic models for describing simultaneous and recursive relationships between phenotypes

scientific article

Radial basis function regression methods for predicting quantitative traits using SNP markers.

scientific article

Reproducing kernel hilbert spaces regression methods for genomic assisted prediction of quantitative traits

scientific article published on April 2008

Rohan Fernando: a road from Sri Lanka to Ames

publication published on 04 February 2022

Searching for recursive causal structures in multivariate quantitative genetics mixed models

scientific article

Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods.

scientific article published in August 2010

Sensitivity to prior specification in Bayesian genome-based prediction models.

scientific article published in June 2013

Structural equation modeling for investigating multi-trait genetic architecture of udder health in dairy cattle

scientific article published on 08 May 2020

The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models

scientific article published on 23 April 2015

Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster

scientific article published on 3 May 2012

Whole genome prediction of bladder cancer risk with the Bayesian LASSO.

scientific article published on 5 May 2014

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