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List of works by Stephen Baker

A Clinical and Epidemiological Investigation of the First Reported Human Infection With the Zoonotic Parasite Trypanosoma evansi in Southeast Asia

scientific article published on 7 February 2016

A Double Blind, Randomized, Placebo-Controlled Trial of Lactobacillus acidophilus for the Treatment of Acute Watery Diarrhea in Vietnamese Children

scientific article published on August 2017

A Multicountry Molecular Analysis of Salmonella enterica Serovar Typhi With Reduced Susceptibility to Ciprofloxacin in Sub-Saharan Africa

scientific article published on March 2016

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions

scientific article published on 11 February 2016

A Qualitative Study Investigating Experiences, Perceptions, and Healthcare System Performance in Relation to the Surveillance of Typhoid Fever in Madagascar

scientific article

A Way Forward for Healthcare in Madagascar?

scientific article published on March 2016

A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation

scientific article

A cohort study to define the age-specific incidence and risk factors of Shigella diarrhoeal infections in Vietnamese children: a study protocol

scientific article

A cross-sectional seroepidemiological survey of typhoid fever in Fiji

scientific article published on 20 July 2017

A current perspective on antimicrobial resistance in Southeast Asia

scientific article published in November 2017

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

scientific article published on 20 February 2015

A linear plasmid truncation induces unidirectional flagellar phase change in H:z66 positive Salmonella Typhi.

scientific article

A multi-center randomized trial to assess the efficacy of gatifloxacin versus ciprofloxacin for the treatment of shigellosis in Vietnamese children

scientific article

A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure

scientific article published on 11 March 2016

A novel linear plasmid mediates flagellar variation in Salmonella Typhi

scientific article

A one-year prospective study of colonization with antimicrobial-resistant organisms on admission to a Vietnamese intensive care unit

scientific article published on 14 September 2017

A prospective descriptive study of cryptococcal meningitis in HIV uninfected patients in Vietnam - high prevalence of Cryptococcus neoformans var grubii in the absence of underlying disease

scientific article

A prospective multi-center observational study of children hospitalized with diarrhea in Ho Chi Minh City, Vietnam

scientific article published on 23 March 2015

A prospective study of the importance of enteric fever as a cause of non-malarial febrile illness in patients admitted to Chittagong Medical College Hospital, Bangladesh

scientific article

A randomised controlled trial of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDITOF-MS) versus conventional microbiological methods for identifying pathogens: Impact on optimal antimicrobial therapy of invasive ba

scientific article published on 23 March 2019

A successful antimicrobial regime for Chromobacterium violaceum induced bacteremia

scientific article

A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection

scientific article

A50 The emergence of G8P[8] rotavirus group A across Vietnam

scientific article

An evaluation of purified Salmonella Typhi protein antigens for the serological diagnosis of acute typhoid fever

scientific article published on 24 May 2017

An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid

scientific article published on 05 October 2016

An oral preparation of Lactobacillus acidophilus for the treatment of uncomplicated acute watery diarrhoea in Vietnamese children: study protocol for a multicentre, randomised, placebo-controlled trial

scientific article published on 28 January 2013

Analysis of the hypervariable region of the Salmonella enterica genome associated with tRNA(leuX).

scientific article published on April 2005

Are we adequately prepared for the emergence of Salmonella enterica serovar Paratyphi A?

scientific article

Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children

scientific article published on 2 August 2017

Assessment and Translation of the Antibody-in-Lymphocyte Supernatant (ALS) Assay to Improve the Diagnosis of Enteric Fever in Two Controlled Human Infection Models and an Endemic Area of Nepal

scientific article published on 23 October 2017

Azithromycin resistance in Shigella spp. in Southeast Asia.

scientific article

Blood culture-PCR to optimise typhoid fever diagnosis after controlled human infection identifies frequent asymptomatic cases and evidence of primary bacteraemia

scientific article published on 24 January 2017

Bloodstream Infections and Frequency of Pretreatment Associated With Age and Hospitalization Status in Sub-Saharan Africa

scientific article published in November 2015

Burden of enteric fever at three urban sites in Africa and Asia: a multicentre population-based study

scientific article published on 01 December 2021

Changing Antimicrobial Resistance Trends in Kathmandu, Nepal: A 23-Year Retrospective Analysis of Bacteraemia

scholarly article by Raphaël M Zellweger et al published 2018 in Frontiers in Medicine

Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii

scientific article published in 2019

Clinical features, antimicrobial susceptibility patterns and genomics of bacteria causing neonatal sepsis in a children's hospital in Vietnam: protocol for a prospective observational study

scientific article

Clinical implications of reduced susceptibility to fluoroquinolones in paediatric Shigella sonnei and Shigella flexneri infections

scientific article published on 17 December 2015

Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A

scientific article

Co-trimoxazole versus azithromycin for the treatment of undifferentiated febrile illness in Nepal: study protocol for a randomized controlled trial

scientific article published on 2 October 2017

Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission

scientific article published in October 2011

Comparative genomics of Cryptococcus neoformans var. grubii associated with meningitis in HIV infected and uninfected patients in Vietnam

scientific article

Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7.

scientific article

Cotrimoxazole treats fluoroquinolone-resistant Salmonella typhi H58 infection

scientific article published on 26 October 2016

Current challenges and possible solutions to improve access to care and treatment for hepatitis C infection in Vietnam: a systematic review

scientific article

Current perspectives on invasive nontyphoidal Salmonella disease

scientific article published on 20 July 2017

Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting

scientific article published on 23 July 2014

Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam.

scientific article published on 28 February 2018

Detection of Vi-negative Salmonella enterica serovar typhi in the peripheral blood of patients with typhoid fever in the Faisalabad region of Pakistan.

scientific article

Diagnostic metabolite biomarkers of chronic typhoid carriage

scientific article

Differential epidemiology of Salmonella Typhi and Paratyphi A in Kathmandu, Nepal: a matched case control investigation in a highly endemic enteric fever setting

scientific article

Differential phenotypic and genotypic characteristics of qnrS1-harboring plasmids carried by hospital and community commensal enterobacteria

scientific article published on 31 January 2011

Diversity of Bartonella spp. in Bats, Southern Vietnam

scientific article published on July 2015

Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid

scientific article published in July 2011

Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins

scientific article published on 20 February 2018

Emergence of carbapenem-resistant Acinetobacter baumannii as the major cause of ventilator-associated pneumonia in intensive care unit patients at an infectious disease hospital in southern Vietnam

scientific article

Endemic norovirus infections in children, Ho Chi Minh City, Vietnam, 2009-2010.

scientific article published on June 2013

Enteric fever in Cambodian children is dominated by multidrug-resistant H58 Salmonella enterica serovar Typhi with intermediate susceptibility to ciprofloxacin

scientific article

Erratum for Parry et al., Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A.

scientific article published on July 2015

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

scientific article published on 12 May 2015

Evaluation of Luminex xTAG Gastrointestinal Pathogen Panel Assay for Detection of Multiple Diarrheal Pathogens in Fecal Samples in Vietnam

scientific article published on 10 February 2016

Evaluation of a simple blood culture amplification and antigen detection method for diagnosis of Salmonella enterica serovar typhi bacteremia.

scientific article published on 24 October 2012

Evaluation of an electricity-free, culture-based approach for detecting typhoidal Salmonella bacteremia during enteric fever in a high burden, resource-limited setting

scientific article (publication date: 2013)

Evaluation of the Clinical and Microbiological Response to Salmonella Paratyphi A Infection in the First Paratyphoid Human Challenge Model

scientific article

Evaluation of the diagnostic accuracy of a typhoid IgM flow assay for the diagnosis of typhoid fever in Cambodian children using a Bayesian latent class model assuming an imperfect gold standard

scientific article

Evolutionary history of Salmonella typhi

scientific article

Expression and function of S100A8/A9 (calprotectin) in human typhoid fever and the murine Salmonella model

scientific article

Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258.

scientific article published on 10 April 2015

Factors associated with a low prevalence of exclusive breastfeeding during hospital stay in urban and semi-rural areas of southern Vietnam

scholarly article by Quynh-Nhi Thi Le et al published 2018 in International Breastfeeding Journal

Fatal consequences of freshwater pearl diving

scientific article published on January 2013

Fatal wound infection caused by Chromobacterium violaceum in Ho Chi Minh City, Vietnam

scientific article

Fitness benefits in fluoroquinolone-resistant Salmonella Typhi in the absence of antimicrobial pressure

scientific article published on 10 December 2013

Fluorescence-Based Flow Sorting in Parallel with Transposon Insertion Site Sequencing Identifies Multidrug Efflux Systems in Acinetobacter baumannii

scientific article

Gallbladder carriage of Salmonella paratyphi A may be an important factor in the increasing incidence of this infection in South Asia

scientific article published in April 2009

Gatifloxacin versus ceftriaxone for uncomplicated enteric fever in Nepal: an open-label, two-centre, randomised controlled trial

scientific article published on 19 January 2016

Gatifloxacin versus chloramphenicol for uncomplicated enteric fever: an open-label, randomised, controlled trial

scientific article published on 29 April 2011

Gatifloxacin versus ofloxacin for the treatment of uncomplicated enteric fever in Nepal: an open-label, randomized, controlled trial

scientific article

Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam

scientific article published on August 2015

Genetic diversity and cross-species transmission of kobuviruses in Vietnam.

scientific article published in January 2018

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

scientific article published on 22 June 2015

Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes

scientific article

Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray

scientific article

Genomic epidemiology of Vibrio cholerae O1 associated with floods, Pakistan, 2010.

scientific article

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

scientific article

High prevalence of plasmid-mediated quinolone resistance determinants in commensal members of the Enterobacteriaceae in Ho Chi Minh City, Vietnam

scientific article published on 20 August 2009

High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children

scientific article published on 31 May 2010

High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia

scientific article published on 5 March 2008

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

scientific article published on 27 July 2008

Highly resistant Salmonella enterica serovar Typhi with a novel gyrA mutation raises questions about the long-term efficacy of older fluoroquinolones for treating typhoid fever

scientific article published on 27 February 2012

Hospital-acquired colonization and infections in a Vietnamese intensive care unit

scientific article published in PLoS ONE

Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains

Identification of Novel Serodiagnostic Signatures of Typhoid Fever Using a Salmonella Proteome Array

scientific article published on 19 September 2017

Identification of Salmonella enterica serovar Typhi genotypes by use of rapid multiplex ligation-dependent probe amplification

scientific article (publication date: September 2013)

Identification of a new cyclovirus in cerebrospinal fluid of patients with acute central nervous system infections

scientific article published on 18 June 2013

Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray.

scientific article published on December 2005

Identification of immunogenic Salmonella enterica serotype Typhi antigens expressed in chronic biliary carriers of S. Typhi in Kathmandu, Nepal

scientific article

Identification of possible virulence marker from Campylobacter jejuni isolates

scientific article

Immune profiling with a Salmonella Typhi antigen microarray identifies new diagnostic biomarkers of human typhoid

scientific article published on 9 January 2013

Immunoproteomic analysis of antibody in lymphocyte supernatant in patients with typhoid fever in Bangladesh

scientific article

In vitro activity of colistin in antimicrobial combination against carbapenem-resistant Acinetobacter baumannii isolated from patients with ventilator-associated pneumonia in Vietnam

scientific article published on 17 July 2015

Incidence of invasive salmonella disease in sub-Saharan Africa: a multicentre population-based surveillance study

scientific article published on March 2017

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

scientific article published on 30 May 2016

Induction of Antimicrobial Resistance in Escherichia coli and Non-Typhoidal Salmonella Strains after Adaptation to Disinfectant Commonly Used on Farms in Vietnam

scientific article

Interaction of Salmonella enterica serovar Typhi with cultured epithelial cells: roles of surface structures in adhesion and invasion ⬇️

scientific article published on July 2008

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

scientific article published on 27 April 2015

Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan

scientific article published on 24 December 2015

Invasive Non-typhoidal Salmonella Infections in Asia: Clinical Observations, Disease Outcome and Dominant Serovars from an Infectious Disease Hospital in Vietnam

scientific article

Kathmandu, Nepal: still an enteric fever capital of the world.

scientific article published on December 2008

Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam

scientific article (publication date: February 2016)

Microbiologic characterization and antimicrobial susceptibility of Clostridium tetani isolated from wounds of patients with clinically diagnosed tetanus.

scientific article

Mobilization of the incQ plasmid R300B with a chromosomal conjugation system in Salmonella enterica serovar typhi

scientific article published on 04 April 2008

Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa

scientific article published on 22 September 2016

Molecular characterization of the Salmonella enterica serovar Typhi Vi-typing bacteriophage E1.

scientific article

Molecular epidemiology and antimicrobial resistance phenotypes of Acinetobacter baumannii isolated from patients in three hospitals in southern Vietnam

scientific article published on January 2017

Most cases of cryptococcal meningitis in HIV-uninfected patients in Vietnam are due to a distinct amplified fragment length polymorphism-defined cluster of Cryptococcus neoformans var. grubii VN1.

scientific article

Multidrug resistant enteric fever in South Asia: unmet medical needs and opportunities

scientific article published in the British Medical Journal

Navigating the future of bacterial molecular epidemiology.

scientific article published on 16 September 2010

New Variant of Multidrug-Resistant Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam

scholarly article by Alison E Mather et al published 4 September 2018 in mBio

No Clinical Benefit of Empirical Antimicrobial Therapy for Pediatric Diarrhea in a High-Usage, High-Resistance Setting

scientific article published on 26 September 2017

Non-typhoidal Salmonella serovars associated with invasive and non-invasive disease in the Lao People's Democratic Republic

scientific article published on 12 January 2018

Novel porcine-like human G26P[19] rotavirus identified in hospitalized paediatric diarrhoea patients in Ho Chi Minh City, Vietnam

scientific article

Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond

scientific article (publication date: July 2016)

Ophthalmic infections in children presenting to Angkor Hospital for Children, Siem Reap, Cambodia.

scientific article

Out of Asia: the independent rise and global spread of fluoroquinolone-resistant Shigella.

scientific article published on 29 March 2018

Outbreaks of Serratia marcescens and Serratia rubidaea bacteremia in a central Kathmandu hospital following the 2015 earthquakes

scholarly article published by Abhilasha Karkey in 2018

Phenotypic and genotypic characteristics of ESBL and AmpC producing organisms associated with bacteraemia in Ho Chi Minh City, Vietnam

scientific article published on 16 October 2017

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

scientific article published on 11 May 2015

Predicting the impact of vaccination on the transmission dynamics of typhoid in South Asia: a mathematical modeling study

scientific article published on 09 January 2014

Prevalence of Salmonella Excretion in Stool: A Community Survey in 2 Sites, Guinea-Bissau and Senegal

scientific article published on March 2016

Prevalence, genetic diversity and recombination of species G enteroviruses infecting pigs in Vietnam

scientific article

Quantifying antimicrobial access and usage for paediatric diarrhoeal disease in an urban community setting in Asia

article

Recent insights into Shigella

scholarly article by Stephen Baker & Hao Chung The published 1 October 2018 in Current Opinion in Infectious Diseases

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward

scientific article

Reproducible diagnostic metabolites in plasma from typhoid fever patients in Asia and Africa

scientific article

Retrospective analysis assessing the spatial and temporal distribution of paediatric acute respiratory tract infections in Ho Chi Minh City, Vietnam

scientific article published on 21 January 2018

Risk factors for the development of severe typhoid fever in Vietnam

scientific article published on 10 February 2014

Rodents and risk in the Mekong Delta of Vietnam: seroprevalence of selected zoonotic viruses in rodents and humans

scientific article

Role of Environmental Factors in Shaping Spatial Distribution of Salmonella enterica Serovar Typhi, Fiji

scientific article published in February 2018

Salmonella Typhi and Salmonella Paratyphi A elaborate distinct systemic metabolite signatures during enteric fever

scientific article

Salmonella Typhi sense host neuroendocrine stress hormones and release the toxin haemolysin E

scientific article

Salmonella chronic carriage: epidemiology, diagnosis, and gallbladder persistence

scientific article

Salmonella enterica serovar Typhi and the pathogenesis of typhoid fever

scientific article published on January 2014

Searching for the elusive typhoid diagnostic

scientific article

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

scientific article published in September 2012

Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands

scientific article published on 6 December 2017

South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study

scientific article

Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri

scientific article published on 4 August 2015

Streptococcus suis and porcine reproductive and respiratory syndrome, Vietnam

scientific article published in February 2013

Structure of general-population antibody titer distributions to influenza A virus

scientific article

Structure of general-population antibody titer distributions to influenza A virus

article published in 2016

Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae

scientific article published on 13 January 2012

Suitable disk antimicrobial susceptibility breakpoints defining Salmonella enterica serovar Typhi isolates with reduced susceptibility to fluoroquinolones

scientific article

Temporal fluctuation of multidrug resistant salmonella typhi haplotypes in the mekong river delta region of Vietnam

scientific article published on 4 January 2011

The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water

scientific article

The Hd, Hj, and Hz66 flagella variants of Salmonella enterica serovar Typhi modify host responses and cellular interactions

scientific article published on 22 January 2015

The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia

scientific article

The Relationship Between Blood Sample Volume and Diagnostic Sensitivity of Blood Culture for Typhoid and Paratyphoid Fever: A Systematic Review and Meta-Analysis

article

The Relationship Between Invasive Nontyphoidal Salmonella Disease, Other Bacterial Bloodstream Infections, and Malaria in Sub-Saharan Africa

scientific article published on March 2016

The Rising Dominance of Shigella sonnei: An Intercontinental Shift in the Etiology of Bacillary Dysentery

scientific article

The Role of Maternally Acquired Antibody in Providing Protective Immunity Against Nontyphoidal Salmonella in Urban Vietnamese Infants: A Birth Cohort Study

scientific article

The STRATAA study protocol: a programme to assess the burden of enteric fever in Bangladesh, Malawi and Nepal using prospective population census, passive surveillance, serological studies and healthcare utilisation surveys

scientific article published on 2 July 2017

The Typhoid Fever Surveillance in Africa Program (TSAP): Clinical, Diagnostic, and Epidemiological Methodologies

scientific article published on March 2016

The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases

scientific article

The antimicrobial resistance patterns and associated determinants in Streptococcus suis isolated from humans in southern Vietnam, 1997-2008.

scientific article

The baseline characteristics and interim analyses of the high-risk sentinel cohort of the Vietnam Initiative on Zoonotic InfectiONS (VIZIONS)

scientific article

The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu

scientific article published on 15 November 2010

The challenges and successes of implementing a sustainable antimicrobial resistance surveillance programme in Nepal

scientific article

The characterization of ESBL genes in Escherichia coli and Klebsiella pneumoniae causing nosocomial infections in Vietnam

scientific article published on 15 December 2013

The co-selection of fluoroquinolone resistance genes in the gut flora of Vietnamese children

scientific article

The decline of typhoid and the rise of non-typhoid salmonellae and fungal infections in a changing HIV landscape: bloodstream infection trends over 15 years in southern Vietnam

scientific article

The dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam

scientific article

The emergence of rotavirus G12 and the prevalence of enteric viruses in hospitalized pediatric diarrheal patients in southern Vietnam

scientific article

The epidemiology and aetiology of diarrhoeal disease in infancy in southern Vietnam: a birth cohort study

scientific article published on 24 March 2015

The evolution of antimicrobial resistance in Salmonella Typhi

scientific article

The genome of Salmonella enterica serovar Typhi

scientific article published on July 2007

The genomic signatures of Shigella evolution, adaptation and geographical spread

scientific article published on 29 February 2016

The global burden and epidemiology of invasive non-typhoidal Salmonella infections

scholarly article by Ruchita Balasubramanian et al published 6 August 2018 in Human Vaccines & Immunotherapeutics

The impact of albendazole treatment on the incidence of viral- and bacterial-induced diarrhea in school children in southern Vietnam: study protocol for a randomized controlled trial

scientific article published on 06 June 2016

The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam

scientific article

The impact of migration and antimicrobial resistance on the transmission dynamics of typhoid fever in Kathmandu, Nepal: A mathematical modelling study

scientific article

The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications

scientific article published on 22 June 2016

The influence of reduced susceptibility to fluoroquinolones in Salmonella enterica serovar Typhi on the clinical response to ofloxacin therapy

scientific article

The microbiological and clinical characteristics of invasive salmonella in gallbladders from cholecystectomy patients in kathmandu, Nepal

scientific article

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

scientific article

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa

scientific article published in Nature Communications

The policy of free healthcare for children under the age of 6 years in Vietnam: assessment of the uptake for children hospitalised with acute diarrhoea in Ho Chi Minh City

scientific article (publication date: December 2013)

The role of prophage-like elements in the diversity of Salmonella enterica serovars

scientific article published in May 2004

The sensitivity of real-time PCR amplification targeting invasive Salmonella serovars in biological specimens

scientific article published on 21 May 2010

The sudden dominance of blaCTX-M harbouring plasmids in Shigella spp. Circulating in Southern Vietnam

scientific article

The transfer and decay of maternal antibody against Shigella sonnei in a longitudinal cohort of Vietnamese infants

scientific article published on 29 December 2015

The utility of diagnostic tests for enteric fever in endemic locations

scientific article published on June 2011

The validation and utility of a quantitative one-step multiplex RT real-time PCR targeting rotavirus A and norovirus

scientific article

Three adult cases of Listeria monocytogenes meningitis in Vietnam

scientific article (publication date: July 2010)

Tracking the establishment of local endemic populations of an emergent enteric pathogen

scientific article published on 30 September 2013

Transmission dynamics and between-species interactions of multidrug-resistant Enterobacteriaceae

article

Treatment Response in Enteric Fever in an Era of Increasing Antimicrobial Resistance: An Individual Patient Data Analysis of 2092 Participants Enrolled into 4 Randomized, Controlled Trials in Nepal

scientific article

Two cases of bacteriemia caused by nontoxigenic, non-O1, non-O139 Vibrio cholerae isolates in Ho Chi Minh City, Vietnam

scientific article

Typhoid carriage in the gallbladder

scientific article published on 16 April 2015

Typhoid conjugate vaccines: a new tool in the fight against antimicrobial resistance

Typhoid fever among hospitalized febrile children in Siem Reap, Cambodia

scientific article published on 20 April 2011

Typhoid fever in Fiji: a reversible plague?

scientific article

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

scientific article published on July 2016

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

Undifferentiated febrile illness in Kathmandu, Nepal

scientific article

Use of Colistin and Other Critical Antimicrobials on Pig and Chicken Farms in Southern Vietnam and Its Association with Resistance in Commensal Escherichia coli Bacteria

scientific article

Utilization of Healthcare in the Typhoid Fever Surveillance in Africa Program

scientific article published on March 2016

Variation at HLA-DRB1 is associated with resistance to enteric fever

scientific article

Variations of Invasive Salmonella Infections by Population Size in Asante Akim North Municipal, Ghana

scientific article

Vi antigen expression in Salmonella enterica serovar Typhi clinical isolates from Pakistan

scientific article published on March 2005

What Have We Learned From the Typhoid Fever Surveillance in Africa Program?

scientific article

Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program

scientific article

Whole genome sequence analysis of Salmonella Typhi isolated in Thailand before and after the introduction of a national immunization program

scholarly article published 21 September 2016

Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina

article

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

scientific article published on 22 March 2013

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