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List of works by Manuel Garber

A composite of multiple signals distinguishes causal variants in regions of positive selection

scientific article

A high-resolution map of human evolutionary constraint using 29 mammals

scientific article

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

scientific article published on 30 August 2012

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

scientific journal article

A negative feedback loop of transcription factors specifies alternative dendritic cell chromatin States.

scientific article published on 20 November 2014

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

scientific article (publication date: May 2010)

An atlas of cell types in the mammalian epididymis and vas deferens

scientific article published on 30 July 2020

Analysis of the DNA sequence and duplication history of human chromosome 15

scientific article

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals

scientific article

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

scientific article (publication date: 12 March 2009)

Closing gaps in the human genome using sequencing by synthesis

scientific article published on 02 June 2009

Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon

scientific article published on 30 January 2018

Computational methods for transcriptome annotation and quantification using RNA-seq ⬇️

scientific article published on May 27, 2011

Correction: Closing gaps in the human genome using sequencing by synthesis.

scientific article published on 19 April 2011

DEBrowser: interactive differential expression analysis and visualization tool for count data

scientific article published on 05 January 2019

DNA sequence analysis of the conserved region around the SOD1 gene locus in recessively inherited ALS.

scientific article published on 9 July 2009

DNA sequence and analysis of human chromosome 18

scientific article

DNA sequence and analysis of human chromosome 8

scientific article

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

scientific article

DNA-binding-domain fusions enhance the targeting range and precision of Cas9.

scientific article

Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.

scientific article

Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells

scientific article published on 16 August 2019

DolphinNext: A graphical user interface for creating, deploying and executing Nextflow pipelines

scientific article published on 01 August 2020

DolphinNext: a distributed data processing platform for high throughput genomics

scientific article published on 19 April 2020

Early Epstein-Barr Virus Genomic Diversity and Convergence toward the B95.8 Genome in Primary Infection

scientific article published in November 2017

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic

scientific article published on November 2016

End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data.

scientific article

Epstein-Barr virus latent membrane protein 1 genetic variability in peripheral blood B cells and oropharyngeal fluids

scientific article published on 15 January 2014

Erratum: Corrigendum: Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

scholarly article published in Nature Biotechnology

Erratum: Corrigendum: DNA sequence and analysis of human chromosome 18

scientific article published in Nature

Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

scientific article published on 2 February 2016

Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

scientific article published on 15 January 2014

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.

scientific article

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome

scientific article

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

scientific article

Genome sequence, comparative analysis and haplotype structure of the domestic dog

scientific article

HIV type 1 (HIV-1) proviral reservoirs decay continuously under sustained virologic control in HIV-1-infected children who received early treatment

scientific article

HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells

scientific article published on 17 February 2020

High Epstein-Barr Virus Load and Genomic Diversity Are Associated with Generation of gp350-Specific Neutralizing Antibodies following Acute Infectious Mononucleosis

scientific article published on 12 October 2016

High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection

scientific article published on 19 September 2020

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus

scientific article published on 07 June 2018

Identifying novel constrained elements by exploiting biased substitution patterns

scientific article

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

scientific article

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

scientific article

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

scientific article

Quality scores and SNP detection in sequencing-by-synthesis systems ⬇️

scientific article published on 22 January 2008

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

scientific article published on 27 April 2020

Semiconductor-based DNA sequencing of histone modification states

scientific article published on January 2013

Simultaneous generation of many RNA-seq libraries in a single reaction

scientific article published on 2 March 2015

Systematic discovery of TLR signaling components delineates viral-sensing circuits

scientific article

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

scientific article published on 22 November 2011

Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation

scientific article published on 17 November 2017

Transcriptome-wide analysis of roles for tRNA modifications in translational regulation

scientific article published on 22 June 2017

Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

scientific article

scRNA-seq of human vitiligo reveals complex networks of subclinical immune activation and a role for CCR5 in T<sub>reg</sub> function

scientific article published on 08 September 2021

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