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List of works by John Sidney

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part two: National Harbor, MD, USA. 9-13 November 2016

scientific article published oln 16 November 2016

A CD8+ T cell heptaepitope minigene vaccine induces protective immunity against Chlamydia pneumoniae

scientific article published on May 2005

A Case of Human Lassa Virus Infection With Robust Acute T-Cell Activation and Long-Term Virus-Specific T-Cell Responses

scientific article published on June 2017

A Protective Role for Dengue Virus-Specific CD8+ T Cells

scientific article (publication date: 15 April 2009)

A Review on T Cell Epitopes Identified Using Prediction and Cell-Mediated Immune Models for Mycobacterium tuberculosis and Bordetella pertussis

scientific article published on 29 November 2018

A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

scientific article published on 16 March 2020

A community resource benchmarking predictions of peptide binding to MHC-I molecules

scientific article published on 9 June 2006

A computational pipeline to generate MHC binding motifs.

scientific article

A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

scientific article

A large fraction of HLA class I ligands are proteasome-generated spliced peptides.

scientific article published on 20 October 2016

A multivalent and cross-protective vaccine strategy against arenaviruses associated with human disease

scientific article

A multivalent vaccination strategy for the prevention of Old World arenavirus infection in humans

scientific article

A population response analysis approach to assign class II HLA-epitope restrictions

scientific article

A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection

scientific article

A rational strategy to design multiepitope immunogens based on multiple Th lymphocyte epitopes

scientific article published in June 2002

A shared MHC supertype motif emerges by convergent evolution in macaques and mice, but is totally absent in human MHC molecules

scientific article

A side-by-side comparison of T cell reactivity to fifty-nine Mycobacterium tuberculosis antigens in diverse populations from five continents

scientific article

A single minor histocompatibility antigen encoded by UGT2B17 and presented by human leukocyte antigen-A*2902 and -B*4403

scientific article published on 01 May 2007

A strategy to determine HLA class II restriction broadly covering the DR, DP, and DQ allelic variants most commonly expressed in the general population

scientific article published on 8 February 2013

A survey of known immune epitopes in the enteroviruses strains associated with acute flaccid myelitis

scientific article published on 23 August 2019

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

scientific article

AIDS virus specific CD8+ T lymphocytes against an immunodominant cryptic epitope select for viral escape

scientific article

Acyclovir Has Low but Detectable Influence on HLA-B*57:01 Specificity without Inducing Hypersensitivity

scientific article

Adjuvanted multi-epitope vaccines protect HLA-A*11:01 transgenic mice against Toxoplasma gondii

scientific article published on 22 September 2016

Allergen and Epitope Targets of Mouse-Specific T Cell Responses in Allergy and Asthma

scientific article published on 13 February 2018

Allergy-associated T cell epitope repertoires are surprisingly diverse and include non-IgE reactive antigens

scientific article

An in silico-in vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients

scientific article published on 15 November 2019

An insertion mutant in DQA1*0501 restores susceptibility to HLA-DM: implications for disease associations.

scientific article published on 20 July 2011

An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities

scientific article

An ontology for major histocompatibility restriction

scientific article

Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial

scientific article

Analysis of T cell responses to the major allergens from German cockroach: epitope specificity and relationship to IgE production

scientific article

Analysis of epitope information related to Bacillus anthracis and Clostridium botulinum

scientific article published in February 2008

Analysis of the binding of gluten T-cell epitopes to various human leukocyte antigen class II molecules

scientific article

Apoptotic Epitope-Specific CD8+ T Cells and Interferon Signaling Intersect in Chronic Hepatitis C Virus Infection

scientific article published on 19 September 2015

Association between specific timothy grass antigens and changes in TH1- and TH2-cell responses following specific immunotherapy

scientific article

Association of HLA-DRB1–restricted CD4+ T cell responses with HIV immune control ⬇️

scientific article published on June 23, 2013

Asymptomatic HLA-A*02:01-restricted epitopes from herpes simplex virus glycoprotein B preferentially recall polyfunctional CD8+ T cells from seropositive asymptomatic individuals and protect HLA transgenic mice against ocular herpes

scientific article

Atheroprotective Vaccination with MHC-II Restricted Peptides from ApoB-100.

scientific article published on 27 December 2013

Atheroprotective vaccination with MHC-II-restricted ApoB peptides induces peritoneal IL-10-producing CD4 T cells

scientific article published on 13 January 2017

Automated benchmarking of peptide-MHC class I binding predictions

scientific article published on 25 February 2015

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications

scientific article published on 3 May 2005

Automatic Generation of Validated Specific Epitope Sets

scientific article

Beyond HLA-A*0201: New HLA-Transgenic Nonobese Diabetic Mouse Models of Type 1 Diabetes Identify the Insulin C-Peptide as a Rich Source of CD8+ T Cell Epitopes ⬇️

scientific article published on April 25, 2012

Bolstering the Number and Function of HSV-1-Specific CD8+ Effector Memory T Cells and Tissue-Resident Memory T Cells in Latently Infected Trigeminal Ganglia Reduces Recurrent Ocular Herpes Infection and Disease.

scientific article published on 24 May 2017

Broad and cross-clade CD4+ T-cell responses elicited by a DNA vaccine encoding highly conserved and promiscuous HIV-1 M-group consensus peptides

scientific article

Broad repertoire of the CD4+ Th cell response in spontaneously controlled hepatitis C virus infection includes dominant and highly promiscuous epitopes

scientific article

Broadly reactive human CD8 T cells that recognize an epitope conserved between VZV, HSV and EBV.

scientific article

Brucella melitensis T cell epitope recognition in humans with brucellosis in Peru

scientific article published on 14 October 2013

CD4 T cells specific for a latency-associated γ-herpesvirus epitope are polyfunctional and cytotoxic

scientific article published on 5 November 2014

CD8 + T-Cell Epitope Mapping for Pneumonia Virus of Mice in H-2 b Mice ⬇️

scientific article published on July 3, 2013

CD8+ T Cells Specific to Apoptosis-Associated Antigens Predict the Response to Tumor Necrosis Factor Inhibitor Therapy in Rheumatoid Arthritis

scientific article published on 10 June 2015

CD8+ T cells from SIV elite controller macaques recognize Mamu-B*08-bound epitopes and select for widespread viral variation

scientific article published on 14 November 2007

Candidate Targets for Immune Responses to 2019-Novel Coronavirus (nCoV): Sequence Homology- and Bioinformatic-Based Predictions

scientific article published on 25 February 2020

Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

scientific article

Cellular immune response to cryptic epitopes during therapeutic gene transfer

scholarly article

Cellular immune responses to the hepatitis B virus polymerase

scientific article published in November 2004

Cellular immune selection with hepatitis C virus persistence in humans

scientific article

Characterization of MHC- and TCR-binding residues of the myelin oligodendrocyte glycoprotein 38-51 peptide

scientific article published in January 2004

Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses

Characterization of the peptide binding specificity of the HLA class I alleles B*38:01 and B*39:06.

scientific article

Characterization of the peptide-binding specificity of Mamu-A*11 results in the identification of SIV-derived epitopes and interspecies cross-reactivity

scientific article

Characterization of the peptide-binding specificity of Mamu-B*17 and identification of Mamu-B*17-restricted epitopes derived from simian immunodeficiency virus proteins

scientific article

Characterization of the peptide-binding specificity of the chimpanzee class I alleles A 0301 and A 0401 using a combinatorial peptide library

scientific article

Characterizing monkeypox virus specific CD8+ T cell epitopes in rhesus macaques

scientific article published on 28 September 2013

Citrullination only infrequently impacts peptide binding to HLA class II MHC

scientific article

Class I molecules with similar peptide-binding specificities are the result of both common ancestry and convergent evolution

scientific article published on 14 February 2003

Classification of A1- and A24-supertype molecules by analysis of their MHC-peptide binding repertoires

scientific article published on 8 July 2005

Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5.

scientific article published on 16 October 2020

Comprehensive analysis of T cell epitope discovery strategies using 17DD yellow fever virus structural proteins and BALB/c (H2d) mice model

scientific article (publication date: 15 August 2008)

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

scientific article published on 09 December 2020

Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells

scientific article published on 11 April 2013

Comprehensive analysis of human immunodeficiency virus type 1-specific CD4 responses reveals marked immunodominance of gag and nef and the presence of broadly recognized peptides

scientific article published on May 2004

Comprehensive immunological evaluation reveals surprisingly few differences between elite controller and progressor Mamu-B*17-positive simian immunodeficiency virus-infected rhesus macaques

scientific article published on 2 April 2008

Consequences of periodic α-to-β(3) residue replacement for immunological recognition of peptide epitopes

scientific article

Conserved hierarchy of helper T cell responses in a chimpanzee during primary and secondary hepatitis C virus infections

scientific article published on January 2004

Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses.

scientific article published on 20 February 2018

Correction: Preventing tumor escape by targeting a post-proteasomal trimming independent epitope

scientific article published on 17 January 2017

Correction: Unexpected Diversity of Cellular Immune Responses against Nef and Vif in HIV-1-Infected Patients Who Spontaneously Control Viral Replication

scientific article published in PLoS ONE

Correlates of protection efficacy induced by vaccinia virus-specific CD8+ T-cell epitopes in the murine intranasal challenge model

scientific article published on March 2009

Counter-regulation of regulatory T cells by autoreactive CD8+ T cells in rheumatoid arthritis

scientific article published on 16 February 2019

Coverage of related pathogenic species by multivalent and cross-protective vaccine design: arenaviruses as a model system

scientific article

Cross-presentation of caspase-cleaved apoptotic self antigens in HIV infection

scientific article published on 18 November 2007

Curation of complex, context-dependent immunological data

scientific article

Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus-Specific CD8 T Cells

article

Cutting edge: Prolonged exposure to HIV reinforces a poised epigenetic program for PD-1 expression in virus-specific CD8 T cells

scientific article published on 14 June 2013

Cutting edge: murine cytomegalovirus induces a polyfunctional CD4 T cell response

scientific article published on May 2008

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

scientific article

Defining the herpes simplex virus-specific CD8+ T cell repertoire in C57BL/6 mice

scientific article published on 25 February 2011

Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses

scientific article

Definition of epitopes and antigens recognized by vaccinia specific immune responses: their conservation in variola virus sequences, and use as a model system to study complex pathogens

scientific article

Dengue virus infection elicits highly polarized CX3CR1+ cytotoxic CD4+ T cells associated with protective immunity

scientific article published on 20 July 2015

Derivation of HLA-B*0702 transgenic mice: functional CTL repertoire and recognition of human B*0702-restricted CTL epitopes

scientific article published on February 2003

Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

scientific article

Detailed characterization of the peptide binding specificity of five common Patr class I MHC molecules

scientific article published on 22 June 2006

Detection of EXP1-Specific CD4+ T Cell Responses Directed Against a Broad Range of Epitopes Including Two Promiscuous MHC Class II Binders During Acute Plasmodium falciparum Malaria

scientific article published on 01 January 2019

Detection of a broad range of low level MHC class II-restricted Hepatitis Delta Virus (HDV)-specific T cell responses regardless of the clinical status

article

Detection of an autoreactive T-cell population within the polyclonal repertoire that undergoes distinct autoimmune regulator (Aire)-mediated selection ⬇️

scientific article

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes

scientific article published on 7 April 2015

Development of a novel clustering tool for linear peptide sequences

scholarly article by Sandeep Kumar Dhanda et al published 6 August 2018 in Immunology

Development of a strategy and computational application to select candidate protein analogues with reduced HLA binding and immunogenicity

scientific article

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

scientific article

Differential Recognition of Mycobacterium tuberculosis-Specific Epitopes as a Function of Tuberculosis Disease History

scientific article

Discovery and characterization of highly immunogenic and broadly recognized mimics of the HIV-1 CTL epitope Gag77-85.

scientific article

Dissecting mechanisms of immunodominance to the common tuberculosis antigens ESAT-6, CFP10, Rv2031c (hspX), Rv2654c (TB7.7), and Rv1038c (EsxJ)

scientific article

Dissociation between epitope hierarchy and immunoprevalence in CD8 responses to vaccinia virus western reserve

scientific article published on June 2008

Divergent Motifs but Overlapping Binding Repertoires of Six HLA-DQ Molecules Frequently Expressed in the Worldwide Human Population ⬇️

scientific article published on October 1, 2010

Diverse recognition of conserved orthopoxvirus CD8+ T cell epitopes in vaccinated rhesus macaques

scientific article published on 14 June 2009

Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire

scientific article

Effect of rheumatoid arthritis (RA) susceptibility genes on the immune response to viral citrullinated peptides in RA

scientific article published on 01 July 2012

Epitope identification and vaccine design for cancer immunotherapy

scientific article

Epitope-specific airway-resident CD4+ T cell dynamics during experimental human RSV infection

scientific article published on 01 January 2020

Epitope-specific immunotherapy targeting CD4-positive T cells in coeliac disease: two randomised, double-blind, placebo-controlled phase 1 studies

scientific article published on 11 May 2017

Erratum: RSV-specific airway resident memory CD8+ T cells and differential disease severity after experimental human infection

scientific article published on 9 March 2016

Erratum: T cells from patients with Parkinson's disease recognize α-synuclein peptides

scientific article published in September 2017

Escape in one of two cytotoxic T-lymphocyte epitopes bound by a high-frequency major histocompatibility complex class I molecule, Mamu-A*02: a paradigm for virus evolution and persistence?

scientific article

Evaluating the immunogenicity of protein drugs by applying in vitro MHC binding data and the immune epitope database and analysis resource

scientific article

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules

scientific article

Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

scientific article

Extensive HLA class I allele promiscuity among viral CTL epitopes

scientific article published on September 2007

Fine specificities of natural regulatory T cells after IVIG therapy in patients with Kawasaki disease

scientific article published on 30 March 2015

Five HLA-DP molecules frequently expressed in the worldwide human population share a common HLA supertypic binding specificity

scientific article

Functional analysis of frequently expressed Chinese rhesus macaque MHC class I molecules Mamu-A1*02601 and Mamu-B*08301 reveals HLA-A2 and HLA-A3 supertypic specificities

scientific article

Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes

scientific article published on 9 February 2011

Generation of NY-ESO-1-specific CD4+ and CD8+ T cells by a single peptide with dual MHC class I and class II specificities: a new strategy for vaccine design.

scientific article published on July 2002

Generation of robust CD8+ T-cell responses against subdominant epitopes in conserved regions of HIV-1 by repertoire mining with mimotopes

scientific article

Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity

scientific article

Gliadin-Specific CD8+ T Cell Responses Restricted by HLA Class I A*0101 and B*0801 Molecules in Celiac Disease Patients

scientific article published in February 2017

Global Assessment of Dengue Virus-Specific CD4+ T Cell Responses in Dengue-Endemic Areas

scientific article published on 13 October 2017

HLA Class I-T cell epitopes from trans-sialidase proteins reveal functionally distinct subsets of CD8+ T cells in chronic Chagas disease

scientific article

HLA Class-II Associated HIV Polymorphisms Predict Escape from CD4+ T Cell Responses.

scientific article published on 24 August 2015

HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity

scientific article

HLA class I binding of mutant EGFR peptides in NSCLC is associated with improved survival

scientific article published on 11 September 2020

HLA class I supertypes: a revised and updated classification

scientific article

HLA class I-restricted responses to vaccinia recognize a broad array of proteins mainly involved in virulence and viral gene regulation

scientific article

HLA shared epitope and ACPA: Just a marker or an active player? ⬇️

scientific article published on August 16, 2013

HLA-A*0201, HLA-A*1101, and HLA-B*0702 transgenic mice recognize numerous poxvirus determinants from a wide variety of viral gene products

scientific article published in October 2005

HLA-A2-restricted protection against lethal lymphocytic choriomeningitis

scientific article published on 13 December 2006

HLA-B*27 subtype specificity determines targeting and viral evolution of a hepatitis C virus-specific CD8+ T cell epitope

scientific article published on 23 August 2013

HLA-DRB1 Alleles Are Associated With Different Magnitudes of Dengue Virus-Specific CD4+ T-Cell Responses

scientific article published on 20 July 2016

Hepatitis C virus immune escape via exploitation of a hole in the T cell repertoire

scientific article

Hepatitis D Virus-Specific CD8+ T Cells Have a Memory-Like Phenotype Associated With Viral Immune Escape in Patients With Chronic Hepatitis D Virus Infection

scientific article published on 18 January 2019

Herpes simplex virus type 2 tegument proteins contain subdominant T-cell epitopes detectable in BALB/c mice after DNA immunization and infection

scientific article published on 04 March 2009

High-avidity autoreactive CD4+ T cells induce host CTL, overcome T(regs) and mediate tumor destruction

scientific article published on September 2009

High-functional-avidity cytotoxic T lymphocyte responses to HLA-B-restricted Gag-derived epitopes associated with relative HIV control

scientific article published on 13 July 2011

High-programmed death-1 levels on hepatitis C virus-specific T cells during acute infection are associated with viral persistence and require preservation of cognate antigen during chronic infection

scientific article

Human CD4+ T cell responses to an attenuated tetravalent dengue vaccine parallel those induced by natural infection, in magnitude, HLA restriction and antigen specificity

scientific article (publication date: 14 December 2016)

Human CD8+ T-Cell Responses Against the 4 Dengue Virus Serotypes Are Associated With Distinct Patterns of Protein Targets

scientific article

Human CD8⁺ and CD4⁺ T cell memory to lymphocytic choriomeningitis virus infection

scientific article published on 7 September 2011

Human Ebola virus infection results in substantial immune activation

scientific article

Human immunome, bioinformatic analyses using HLA supermotifs and the parasite genome, binding assays, studies of human T cell responses, and immunization of HLA-A*1101 transgenic mice including novel adjuvants provide a foundation for HLA-A03 restri

scientific article

Human leukocyte antigen B27 selects for rare escape mutations that significantly impair hepatitis C virus replication and require compensatory mutations

scientific article

Human rhinovirus-specific CD8 T cell responses target conserved and unusual epitopes

scientific article published on 23 November 2020

IMMU-41. H3.3K27M MUTATION-DERIVED NOVEL NEOANTIGEN – CHARACTERIZATION OF THE HLA-A2-BINDING EPITOPE AND A SPECIFIC T CELL RECEPTOR FOR DEVELOPMENT OF T CELL-BASED IMMUNOTHERAPY

scholarly article

IMMUNOCAT-a data management system for epitope mapping studies

scientific article (publication date: 2010)

Identification and characterization of CD4+ T cell epitopes after Shingrix vaccination

scientific article published on 30 September 2020

Identification of CD4+ T cell epitopes in C. burnetii antigens targeted by antibody responses

scientific article

Identification of Novel Yellow Fever Class II Epitopes in YF-17D Vaccinees

scientific article published on 12 November 2020

Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic data

scientific article

Identification of T. gondii epitopes, adjuvants, and host genetic factors that influence protection of mice and humans

scientific article

Identification of broad binding class I HLA supertype epitopes to provide universal coverage of influenza A virus

scientific article published on 10 March 2010

Identification of conserved and HLA promiscuous DENV3 T-cell epitopes

scientific article

Identification of immunodominant CD4-restricted epitopes co-located with antibody binding sites in individuals vaccinated with ALVAC-HIV and AIDSVAX B/E.

scientific article

Identification of multiple HLA-A*0201-restricted cruzipain and FL-160 CD8+ epitopes recognized by T cells from chronically Trypanosoma cruzi-infected patients

scientific article

Identification of novel consensus CD4 T-cell epitopes from clade B HIV-1 whole genome that are frequently recognized by HIV-1 infected patients

scientific article published in November 2006

Identification of paramyosin T cell epitopes associated with human resistance to Schistosoma mansoni reinfection.

scientific article published in December 2005

Identification of poxvirus CD8+ T cell determinants to enable rational design and characterization of smallpox vaccines

scientific article published on 28 December 2004

Identification of protective Lassa virus epitopes that are restricted by HLA-A2.

scientific article

Identification of seventeen new simian immunodeficiency virus-derived CD8+ T cell epitopes restricted by the high frequency molecule, Mamu-A*02, and potential escape from CTL recognition

scientific article published in October 2004

Identification of the peptide-binding motif recognized by the pigtail macaque class I MHC molecule Mane-A1*082:01 (Mane A*0301) ⬇️

scientific article published on January 26, 2012

Immunization with apical membrane antigen 1 confers sterile infection-blocking immunity against Plasmodium sporozoite challenge in a rodent model.

scientific article published on 08 July 2013

Immunodominance changes as a function of the infecting dengue virus serotype and primary versus secondary infection

scientific article

Immunodominance in allergic T-cell reactivity to Japanese cedar in different geographic cohorts.

scientific article published in December 2016

Immunodominant Dengue Virus-Specific CD8+ T Cell Responses Are Associated with a Memory PD-1+ Phenotype

scientific article

Immunodominant epitopes in herpes simplex virus type 2 glycoprotein D are recognized by CD4 lymphocytes from both HSV-1 and HSV-2 seropositive subjects

scientific article published in November 2008

Immunodominant tuberculosis CD8 antigens preferentially restricted by HLA-B

scientific article

Immunogenic HLA-B7-restricted peptides of hTRT.

scientific article published on 31 October 2006

Immunogenic peptides can be detected in whole gluten by transamidating highly susceptible glutamine residues: implication in the search for gluten-free cereals

scientific article published on 11 January 2013

Immunogenicity and cross-reactivity of a representative ancestral sequence in hepatitis C virus infection

scientific article

Immunogenicity of a recombinant protein containing the Plasmodium vivax vaccine candidate MSP1(19) and two human CD4+ T-cell epitopes administered to non-human primates (Callithrix jacchus jacchus).

scientific article published on 2 June 2006

Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes

scientific article

Immunomic analysis of the repertoire of T-cell specificities for influenza A virus in humans

scientific article published on 08 October 2008

Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells

scientific article published on 22 June 2020

Impact of HLA-B alleles, epitope binding affinity, functional avidity, and viral coinfection on the immunodominance of virus-specific CTL responses

scientific article published in April 2006

Impact of distinct poxvirus infections on the specificities and functionalities of CD4+ T cell responses

scientific article

Impact of pre-adapted HIV transmission.

scientific article published on 16 May 2016

Improved immunogenicity of an immunodominant epitope of the HER-2/neu protooncogene by alterations of MHC contact residues

scientific article published on March 2004

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules

scientific article

In silico prediction of peptides binding to multiple HLA-DR molecules accurately identifies immunodominant epitopes from gp43 of Paracoccidioides brasiliensis frequently recognized in primary peripheral blood mononuclear cell responses from sensitiz

scientific article

Increased CD8+ T cell responses to apoptotic T cell-associated antigens in multiple sclerosis

scientific article published on 27 July 2013

Insights into HLA-restricted T cell responses in a novel mouse model of dengue virus infection point toward new implications for vaccine design

scientific article

Intestinal T cell responses to gluten peptides are largely heterogeneous: implications for a peptide-based therapy in celiac disease

scientific article published in April 2009

Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction

scientific article published on 02 October 2020

Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes

scholarly article

Lack of evidence for post-vaccine onset of autoimmune/lymphoproliferative disorders, during a nine-month follow-up in multiply vaccinated Italian military personnel

scientific article published on 15 June 2017

Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection

scientific article published on 16 May 2019

Low HLA binding of diabetes-associated CD8+ T-cell epitopes is increased by post translational modifications

scientific article published on 21 March 2018

Lymphocytic choriomeningitis virus infection yields overlapping CD4+ and CD8+ T-cell responses

scientific article published on October 2008

MAGE-6 encodes HLA-DRbeta1*0401-presented epitopes recognized by CD4+ T cells from patients with melanoma or renal cell carcinoma.

scientific article

Mapping immune responses to mRBP-3 1-16 peptide with altered peptide ligands

scientific article published on May 2006

Mapping the MHC Class I-Spliced Immunopeptidome of Cancer Cells

scientific article published on 13 November 2018

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

scientific article published on February 2017

Measurement of MHC/peptide interactions by gel filtration or monoclonal antibody capture

scientific article

Memory T cells in latent Mycobacterium tuberculosis infection are directed against three antigenic islands and largely contained in a CXCR3+CCR6+ Th1 subset

scientific article

Microbiota epitope similarity either dampens or enhances the immunogenicity of disease-associated antigenic epitopes.

scientific article

Molecular determinants of T cell epitope recognition to the common Timothy grass allergen

scientific article published on 16 June 2010

Most viral peptides displayed by class I MHC on infected cells are immunogenic

scientific article

Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients

scientific article published on 21 August 2012

Mycobacterial ESAT-6 and katG are recognized by sarcoidosis CD4+ T cells when presented by the American sarcoidosis susceptibility allele, DRB1*1101.

scientific article

Naive precursor frequencies and MHC binding rather than the degree of epitope diversity shape CD8+ T cell immunodominance

scientific article published in August 2008

Naturally processed HLA-DR3-restricted HHV-6B peptides are recognized broadly with polyfunctional and cytotoxic CD4 T-cell responses

scientific article published on 02 May 2019

NetMHCpan, a method for MHC class I binding prediction beyond humans

scientific article published on 12 November 2008

New epitopes in ovalbumin provide insights for cancer neoepitopes.

scientific article

Novel Plasmodium antigens identified via genome-based antibody screen induce protection associated with polyfunctional T cell responses.

scientific article published on 8 November 2017

Novel and shared neoantigen derived from histone 3 variant H3.3K27M mutation for glioma T cell therapy

scientific article published on 4 December 2017

Patterns of cellular immunity associated with experimental infection with rDEN2Δ30 (Tonga/74) supports its suitability as a human DENV challenge strain

scientific article (publication date: February 2017)

Peptide binding predictions for HLA DR, DP and DQ molecules

scientific article

Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles

scientific article

Peptide-binding motifs of two common equine class I MHC molecules in Thoroughbred horses

scientific article

Polyfunctional CD4+ T cell responses to a set of pathogenic arenaviruses provide broad population coverage

scientific article

Polyfunctional type-1, -2, and -17 CD8⁺ T cell responses to apoptotic self-antigens correlate with the chronic evolution of hepatitis C virus infection

scientific article

Poxvirus CD8+ T-cell determinants and cross-reactivity in BALB/c mice

scientific article

Predicting HLA CD4 Immunogenicity in Human Populations.

scientific article

Predicting T cell recognition of MHC class I restricted neoepitopes

scientific article published on 27 August 2018

Predicting population coverage of T-cell epitope-based diagnostics and vaccines

scientific article published on 17 March 2006

Preventing tumor escape by targeting a post-proteasomal trimming independent epitope.

scientific article published on 03 October 2016

Previously undescribed grass pollen antigens are the major inducers of T helper 2 cytokine-producing T cells in allergic individuals

scientific article published on 11 February 2013

Prior Dengue virus exposure shapes T cell immunity to Zika virus in humans

scientific article published on 4 October 2017

Profiling MHC II immunopeptidome of blood-stage malaria reveals that cDC1 control the functionality of parasite-specific CD4 T cells.

scientific article published on 21 September 2017

Protective Role of Cross-Reactive CD8 T Cells Against Dengue Virus Infection

scientific article published on 07 October 2016

Protein nanovaccine confers robust immunity against Toxoplasma

scientific article published on 5 September 2017

Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses

scientific article published on 28 June 2019

Quantitating T cell cross-reactivity for unrelated peptide antigens

scientific article (publication date: October 2009)

Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

scientific article

RSV-specific airway resident memory CD8+ T cells and differential disease severity after experimental human infection

scientific article

Rationally engineered therapeutic proteins with reduced immunogenicity

scientific article published in March 2005

Recognition of Class II MHC Peptide Ligands That Contain β-Amino Acids

scientific article published on 07 August 2019

Regulatory CD4+ T Cells Recognize MHC-II-Restricted Peptide Epitopes of Apolipoprotein B.

scientific article published on 27 March 2018

Relapse or eradication of cancer is predicted by peptide-major histocompatibility complex affinity

scientific article

Reply to Satheshkumar and Moss: Poxvirus transcriptome analysis.

scholarly article

Restricted myeloperoxidase epitopes drive the adaptive immune response in MPO-ANCA vasculitis

scientific article published on 02 August 2019

Reversion of CTL escape–variant immunodeficiency viruses in vivo

article

Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans

scientific article

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 159 individuals from the Worcester region of the Western Cape province of South Africa

scientific article published on 2 February 2018

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 339 adults from Managua, Nicaragua

scientific article published on 6 November 2017

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA

scientific article published on 29 September 2018

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 714 adults from Colombo, Sri Lanka

scientific article published on 28 December 2017

Simultaneous prediction of binding capacity for multiple molecules of the HLA B44 supertype

scientific article published in December 2003

Spleen Cells from Young but Not Old Immunized Mice Eradicate Large Established Cancers ⬇️

scientific article published on March 13, 2012

Structural and functional constraints limit options for cytotoxic T-lymphocyte escape in the immunodominant HLA-B27-restricted epitope in human immunodeficiency virus type 1 capsid

scientific article published on 2 April 2008

Structural basis for the presentation of tumor-associated MHC class II-restricted phosphopeptides to CD4+ T cells

scientific article

Structural snapshot of aberrant antigen presentation linked to autoimmunity: the immunodominant epitope of MBP complexed with I-Au

scientific article

Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity

scientific article

Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia

scientific article

T cell neoepitope discovery in colorectal cancer by high throughput profiling of somatic mutations in expressed genes

scientific article published on 17 December 2015

T cell responses to known allergen proteins are differently polarized and account for a variable fraction of total response to allergen extracts

scientific article

T cells from patients with Parkinson's disease recognize α-synuclein peptides

scientific article

T-cell memory responses elicited by yellow fever vaccine are targeted to overlapping epitopes containing multiple HLA-I and -II binding motifs

scientific article

TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates

scientific article published on August 2016

The CD4+ T-cell epitope-binding register is a critical parameter when generating functional HLA-DR tetramers with promiscuous peptides

scientific article published on June 2010

The CD8+ T-cell response to lymphocytic choriomeningitis virus involves the L antigen: uncovering new tricks for an old virus

scientific article published on 28 February 2007

The HLA molecules DQA1*0501/B1*0201 and DQA1*0301/B1*0302 share an extensive overlap in peptide binding specificity

scientific article (publication date: November 2002)

The Length Distribution of Class I-Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele-Specific Binding Preference

scientific article published on 18 January 2016

The T210M Substitution in the HLA-a*02:01 gp100 Epitope Strongly Affects Overall Proteasomal Cleavage Site Usage and Antigen Processing

scientific article

The common equine class I molecule Eqca-1*00101 (ELA-A3.1) is characterized by narrow peptide binding and T cell epitope repertoires

scientific article

The design and implementation of the immune epitope database and analysis resource

scientific article published on 14 May 2005

The effect of acylation with fatty acids and other modifications on HLA class II:peptide binding and T cell stimulation for three model peptides.

scientific article published on 14 May 2018

The high frequency Indian rhesus macaque MHC class I molecule, Mamu-B*01, does not appear to be involved in CD8+ T lymphocyte responses to SIVmac239

scientific article published on 01 November 2005

The human CD8+ T cell responses induced by a live attenuated tetravalent dengue vaccine are directed against highly conserved epitopes

scientific article

The immune epitope database and analysis resource: from vision to blueprint

scientific article

The majority of currently circulating human immunodeficiency virus type 1 clade B viruses fail to prime cytotoxic T-lymphocyte responses against an otherwise immunodominant HLA-A2-restricted epitope: implications for vaccine design

scientific article

The most common Chinese rhesus macaque MHC class I molecule shares peptide binding repertoire with the HLA-B7 supertype

scientific article

The nucleocapsid protein of Rift Valley fever virus is a potent human CD8+ T cell antigen and elicits memory responses

scientific article

The role of MHC class I allele Mamu-A*07 during SIV(mac)239 infection

scientific article

Towards an immunosense vaccine to prevent toxoplasmosis: protective Toxoplasma gondii epitopes restricted by HLA-A*0201

scientific article

Toxoplasma gondii HLA-B*0702-restricted GRA7(20-28) peptide with adjuvants and a universal helper T cell epitope elicits CD8(+) T cells producing interferon-γ and reduces parasite burden in HLA-B*0702 mice

scientific article published on 12 October 2011

Tumor-associated carbohydrate antigens: a possible avenue for cancer prevention

scientific article published in August 2005

Two MHC class I molecules associated with elite control of immunodeficiency virus replication, Mamu-B*08 and HLA-B*2705, bind peptides with sequence similarity

scientific article

Two kinetic patterns of epitope-specific CD8 T-cell responses following murine gammaherpesvirus 68 infection

scientific article

Unexpected diversity of cellular immune responses against Nef and Vif in HIV-1-infected patients who spontaneously control viral replication

scientific article

Urinary Peptides As a Novel Source of T Cell Allergen Epitopes.

scientific article

Vaccine-induced HIV-specific CD8+ T cells utilize preferential HLA alleles and target-specific regions of HIV-1.

scientific article

Vaccinia virus-specific CD4+ T cell responses target a set of antigens largely distinct from those targeted by CD8+ T cell responses

scientific article

Widespread Tau-Specific CD4 T Cell Reactivity in the General Population

scientific article published on 13 May 2019

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