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List of works by Peter L Freddolino

A Thermosensitive, Phase-Variable Epigenetic Switch: pap Revisited

scientific article published on 29 July 2020

Correction to "Deficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy Landscapes"

scientific article published on 25 November 2020

Deficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy Landscapes.

scientific article

Dynamic landscape of protein occupancy across the Escherichia coli chromosome

scientific article published on 25 June 2021

Escherichia coli Lrp Regulates One-Third of the Genome via Direct, Cooperative, and Indirect Routes

scientific article published on 11 January 2019

Escherichia coli YigI is a Conserved Gammaproteobacterial Acyl-CoA Thioesterase Permitting Metabolism of Unusual Fatty Acid Substrates

scientific article published in 2022

Expression of Concern for "Deficiencies in Molecular Dynamics Simulation-Based Prediction of Protein-DNA Binding Free Energy Landscapes"

scientific article published on 09 May 2018

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

scientific article published on 04 January 2021

Genetic context effects can override canonical <i>cis</i> regulatory elements in <i>Escherichia coli</i>

scientific article published in 2022

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

scientific article published in 2024

Persistent epigenetic reprogramming of sweet taste by diet

scientific article published on 11 November 2020

Principles of mRNA control by human PUM proteins elucidated from multi-modal experiments and integrative data analysis

scientific article published on 04 August 2020

Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster ⬇️

scientific article published on 06 September 2019

Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry.

scientific article published on 5 April 2018

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