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List of works by James T Yurkovich

A systems approach to clinical oncology uses deep phenotyping to deliver personalized care

scientific article published on 16 October 2019

Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells.

scientific article

Cellular responses to reactive oxygen species are predicted from molecular mechanisms

scientific article published on 03 July 2019

Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow

article published in the Proceedings of the National Academy of Sciences of the United States of America

Community standards to facilitate development and address challenges in metabolic modeling

scientific article published on 01 August 2020

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.

scientific article published on 01 March 2019

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.

scientific article

Genome-scale metabolic model of the rat liver predicts effects of diet restriction

scientific article published on 08 July 2019

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits

scientific article published in Nature Communications

Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities.

scientific article published on 5 September 2017

Gut microbiome pattern reflects healthy ageing and predicts survival in humans

scientific article published on 18 February 2021

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

scientific article published in Nature Communications

Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials

scientific article published on 07 August 2018

Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks

scientific article

Systems biology as an emerging paradigm in transfusion medicine.

scientific article published on 7 March 2018

The quantitative metabolome is shaped by abiotic constraints

scientific article published in 2021

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