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List of works by Ulas Karaoz

A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae

scientific article

Afri-Can Forum 2 : Johannesburg, South Africa. 16-18 February 2015

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

scientific article

Bacteria increase arid-land soil surface temperature through the production of sunscreens

scientific article

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

scientific article

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus

scientific article

Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries

scientific article

Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance

scientific article

Divergent aquifer biogeochemical systems converge on similar and unexpected Cr(VI) reduction products

scientific article published on 13 August 2014

Diversity and structure of soil bacterial communities associated with vultures in an African savanna

scientific article published in 2012

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

scientific article published on 19 March 2018

Exometabolite niche partitioning among sympatric soil bacteria

scientific article

Feeding-Related Gut Microbial Composition Associates With Peripheral T-Cell Activation and Mucosal Gene Expression in African Infants

scientific article published on 5 April 2018

Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1

scientific article published on 12 October 2012

Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle

scientific article published on 11 March 2019

Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee

scientific article

Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial

scientific article published on 04 November 2020

Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets

scientific article

Induction of intestinal Th17 cells by segmented filamentous bacteria

scientific article (publication date: 30 October 2009)

Influence of root cortical aerenchyma on the rhizosphere microbiome of field-grown maize

Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust

scientific article

Large Blooms of Bacillales (Firmicutes) Underlie the Response to Wetting of Cyanobacterial Biocrusts at Various Stages of Maturity.

scientific article published on 6 March 2018

Legacy Effects of Intercropping and Nitrogen Fertilization on Soil N Cycling, Nitrous Oxide Emissions, and the Soil Microbial Community in Tropical Maize Production

scientific article published in 2021

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics.

scientific article published on 2 January 2018

METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

scientific article published on 16 February 2022

Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria

scientific article published on 29 October 2019

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

scientific article published on 15 November 2017

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat

scientific article published in PLoS ONE

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat

scientific article

Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer

scientific article published on 25 January 2017

Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer

scientific article published on 04 March 2016

Microbial Phosphorus Mobilization Strategies Across a Natural Nutrient Limitation Gradient and Evidence for Linkage With Iron Solubilization Traits

scientific article published in 2021

Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits.

scientific article

Next generation modeling of microbial souring – Parameterization through genomic information

scientific article published in January 2018

Niche differentiation is spatially and temporally regulated in the rhizosphere

scientific article published on 17 January 2020

Niche differentiation is spatially and temporally regulated in the rhizosphere

scientific article

Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer

scientific article published on 17 July 2019

Predictions of rhizosphere microbiome dynamics with a genome-informed and trait-based energy budget model

scholarly article

Simrank: Rapid and sensitive general-purpose k-mer search tool

scientific article

Structure of the human gastric bacterial community in relation to Helicobacter pylori status

scientific article

The Snowmelt Niche Differentiates Three Microbial Life Strategies That Influence Soil Nitrogen Availability During and After Winter

scientific article published on 15 May 2020

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

scientific article published on 24 October 2016

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Uncovering multiple molecular targets for caffeine using a drug target validation strategy combining A 2A receptor knockout mice with microarray profiling

scientific article published on 03 March 2009

Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens

scientific article

Whole-genome annotation by using evidence integration in functional-linkage networks

scholarly article

Whole-genome sequencing and single nucleotide polymorphisms in multidrug-resistant clinical isolates of Mycobacterium tuberculosis from the Philippines

scientific article published on 18 August 2018

microTrait: A Toolset for a Trait-Based Representation of Microbial Genomes

scientific article published in 2022

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