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List of works by Eunok Paek

ACTG: novel peptide mapping onto gene models.

scientific article published on 28 December 2016

CIFTER: automated charge-state determination for peptide tandem mass spectra.

scientific article

Cataract-Associated New Mutants S175G/H181Q of βΒ2-Crystallin and P24S/S31G of γD-Crystallin Are Involved in Protein Aggregation by Structural Changes

scientific article published on 05 September 2020

Characterization of disulfide bonds by planned digestion and tandem mass spectrometry.

scientific article published on April 2015

Common Repository of FBS Proteins (cRFP) To Be Added to a Search Database for Mass Spectrometric Analysis of Cell Secretome

scientific article published on 10 September 2019

Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses

scientific article published on 19 November 2014

Comprehensive analysis of human protein N-termini enables assessment of various protein forms.

scientific article

Computational methods in mass spectrometry-based structural proteomics for studying protein structure, dynamics, and interactions

scientific article published on 10 June 2020

Data-Dependent Scoring Parameter Optimization in MS-GF+ Using Spectrum Quality Filter

scientific article published on 26 July 2018

Estimating influence of cofragmentation on peptide quantification and identification in iTRAQ experiments by simulating multiplexed spectra

scientific article published on 23 June 2014

Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification

scientific article

Fast multi-blind modification search through tandem mass spectrometry

scientific article published on 20 December 2011

HiXCorr: a portable high-speed XCorr engine for high-resolution tandem mass spectrometry

scientific article published on 26 August 2015

High-throughput peptide quantification using mTRAQ reagent triplex ⬇️

scientific article published on February 15, 2011

Improved quantitative analysis of mass spectrometry using quadratic equations

scientific article published in May 2010

Integrated pharmaco-proteogenomics defines two subgroups in isocitrate dehydrogenase wild-type glioblastoma with prognostic and therapeutic opportunities

scientific article published on 03 July 2020

Isoform-specific regulation of Akt by PDGF-induced reactive oxygen species ⬇️

scientific article published on June 13, 2011

Isotopic peak intensity ratio based algorithm for determination of isotopic clusters and monoisotopic masses of polypeptides from high-resolution mass spectrometric data

scientific article

MODi: a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra

scientific article

MODplus: Robust and Unrestrictive Identification of Post-Translational Modifications Using Mass Spectrometry

scientific article published on 14 August 2019

Monoisotopic Mass Determination Algorithm for Selenocysteine-Containing Polypeptides from Mass Spectrometric Data Based on Theoretical Modeling of Isotopic Peak Intensity Ratios ⬇️

scientific article published on August 13, 2012

Multi-layered representation for cell signaling pathways.

scientific article published on 02 August 2004

MutCombinator: identification of mutated peptides allowing combinatorial mutations using nucleotide-based graph search

scientific article published on 01 July 2020

New algorithm for the identification of intact disulfide linkages based on fragmentation characteristics in tandem mass spectra.

scientific article published in January 2010

NextSearch: A Search Engine for Mass Spectrometry Data against a Compact Nucleotide Exon Graph

scientific article published on 9 June 2015

Novel Oxidative Modifications in Redox-Active Cysteine Residues ⬇️

scientific article published on December 10, 2010

Prediction of novel modifications by unrestrictive search of tandem mass spectra.

scientific article published in October 2009

Proteogenomic Approach to UTR Peptide Identification

scientific article published on 05 December 2019

Proteogenomic Characterization of Human Early-Onset Gastric Cancer

scientific article published on 01 January 2019

Quality assessment of tandem mass spectra based on cumulative intensity normalization

scientific article published on December 2006

Reinvestigation of aminoacyl-tRNA synthetase core complex by affinity purification-mass spectrometry reveals TARSL2 as a potential member of the complex

scientific article

Software eyes for protein post-translational modifications.

scientific article published on 02 June 2014

Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: application to glyceraldehyde-3-phosphate dehydrogenase

scientific article

Systematic Comparison of False-Discovery-Rate-Controlling Strategies for Proteogenomic Search Using Spike-in Experiments.

scientific article

Target-Decoy with Mass Binning: a simple and effective validation method for shotgun proteomics using high resolution mass spectrometry

scientific article published on 01 February 2010

The protein-disulfide isomerase DsbC cooperates with SurA and DsbA in the assembly of the essential β-barrel protein LptD.

scientific article

Unrestrictive identification of multiple post-translational modifications from tandem mass spectrometry using an error-tolerant algorithm based on an extended sequence tag approach

scientific article published on 12 August 2008

deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS

scientific article published on 28 February 2019

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