List of works - Dong Xu

A deep dense inception network for protein beta-turn prediction

scientific article published on 23 July 2019

A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility

AI-aided design of novel targeted covalent inhibitors against SARS-CoV-2

scientific article (preprint)

An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network

scientific article published on 29 June 2020

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.

scientific article

Computational methods for protein localization prediction

scientific article published in 2021

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism

scientific article published on 01 May 2021

Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples.

scientific article published on 27 June 2018

G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers

scientific article published on 01 July 2021

Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing

publication published on 08 February 2021

Improving Protein Gamma-Turn Prediction Using Inception Capsule Networks

scientific article published in Scientific Reports

MUFOLD-SS: New deep inception-inside-inception networks for protein secondary structure prediction.

scientific article published in March 2018

Neural relational inference to learn long-range allosteric interactions in proteins from molecular dynamics simulations

scientific article published on 29 March 2022

Overcoming Wnt-β-catenin dependent anticancer therapy resistance in leukaemia stem cells

scientific article published on 20 April 2020

Overlapping Community Detection Based on Membership Degree Propagation

scientific article published on 24 December 2020

Proteomic and Bioinformatic Profiling of Transporters in Higher Plant Mitochondria

scientific article published on 16 August 2020

The Deep Learning-Based Recommender System "Pubmender" for Choosing a Biomedical Publication Venue: Development and Validation Study.

scientific article published on 24 May 2019

Understanding the Phosphorylation Mechanism by Using Quantum Chemical Calculations and Molecular Dynamics Simulations