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List of works by Matan Hofree

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

scientific article published on 23 May 2019

A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq

scientific article published on 25 July 2020

A decade of systems biology

scientific article

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

scientific article published on 11 May 2020

Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6.

scientific article published on September 2017

Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

scientific article published on 25 June 2020

Challenges in identifying cancer genes by analysis of exome sequencing data.

scientific article

Emergence of a High-Plasticity Cell State during Lung Cancer Evolution

scientific article published on 08 July 2020

Erratum to: Network-driven plasma proteomics expose molecular changes in the Alzheimer's brain

scientific article published on 23 May 2016

Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation

scientific article published on 15 November 2017

Exome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function ERF Mutations.

scientific article published on 17 May 2017

Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders

scientific journal article

Functional genome-wide siRNA screen identifies KIAA0586 as mutated in Joubert syndrome ⬇️

scientific article published on 30 May 2015

Genome wide proteomics of ERBB2 and EGFR and other oncogenic pathways in inflammatory breast cancer

scientific article

Genotype to phenotype via network analysis

scientific article

Identifying mutation specific cancer pathways using a structurally resolved protein interaction network.

scientific article

Inactivation of Capicua drives cancer metastasis

scientific article

Integrated Proteomic and Genomic Analysis of Gastric Cancer Patient Tissues

scientific article published on 05 October 2015

Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.

scientific article published on 10 February 2017

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

scientific article published on 01 July 2019

Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair-Deficient Colorectal Cancer

scientific article published on 19 June 2019

Massively parallel single-nucleus RNA-seq with DroNc-seq

scientific article published on 28 August 2017

Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss

scientific article

Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens

scientific article published in 2023

Network-based stratification of tumor mutations

scientific article published on 15 September 2013

Rapid CLIP dissociation from MHC II promotes an unusual antigen presentation pathway in autoimmunity

scientific article published on 05 September 2018

Regenerative potential of prostate luminal cells revealed by single-cell analysis

scientific article published on 01 May 2020

RepTar: a database of predicted cellular targets of host and viral miRNAs

scientific article

Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers

scientific article published on 01 August 2019

The SARS-CoV-2 Transcriptional Metabolic Signature in Lung Epithelium

scientific article

The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.

scientific article published on 13 September 2017

Using functional signature ontology (FUSION) to identify mechanisms of action for natural products

scientific article

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