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List of works by Rebecca A Halpin

Adaptation of pandemic H2N2 influenza A viruses in humans.

scientific article

Analysis of recombinant H7N9 wild-type and mutant viruses in pigs shows that the Q226L mutation in HA is important for transmission

scientific article

Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

scholarly article published by Susmita Shrivastava in 2018

Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing ⬇️

scientific article published on November 6, 2012

Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem

scholarly article by Divya Venkatesh published in August 2018

Biologic, antigenic, and full-length genomic characterization of a bovine-like coronavirus isolated from a giraffe

scientific article published on 7 March 2007

Bovine-like coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses, based on complete genomic sequences.

scientific article published on 8 October 2008

Comparative In Vitro and In Vivo Studies of Porcine Rotavirus G9P[13] and Human Rotavirus Wa G1P[8].

scientific article published on 14 October 2015

Comparative genomics of emerging human ehrlichiosis agents

scientific article

Complete Genome Sequence of a Reassortant H14N2 Avian Influenza Virus from California ⬇️

scientific article published on August 1, 2013

Complete genomic sequence for an avian group G rotavirus from South Africa

scientific article

Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus

scientific article published on 4 October 2006

Correction for Joseph et al., Adaptation of pandemic H2N2 influenza A viruses in humans

scientific article published on April 2015

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

scientific article

Correction: Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States.

scientific article published on 15 December 2008

Decreased serologic response in vaccinated military recruits during 2011 correspond to genetic drift in concurrent circulating pandemic A/H1N1 viruses

scientific article

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification

scientific article published on 05 October 2016

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance

scientific article

Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic

scholarly article by Yi Tan et al published July 2018 in PLoS Neglected Tropical Diseases

Dual infection of novel influenza viruses A/H1N1 and A/H3N2 in a cluster of Cambodian patients

scientific article

Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential

scientific article

Equine influenza A(H3N8) virus isolated from Bactrian camel, Mongolia

scientific article

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

scientific article published on 3 August 2017

Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.

scientific article published on 06 June 2013

Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community

scientific article

First Complete Genome Sequences of Two Keystone Viruses from Florida

scientific article

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

scientific article

Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids.

scientific article

Genomewide analysis of reassortment and evolution of human influenza A(H3N2) viruses circulating between 1968 and 2011

scientific article

Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination

scientific article

Genomic and protein structural maps of adaptive evolution of human influenza A virus to increased virulence in the mouse

scientific article

Genomic reassortment of influenza A virus in North American swine, 1998-2011.

scientific article

H7N9 influenza A virus in turkeys in Minnesota

scientific article

Impaired Tumor-infiltrating T Cells in Patients with COPD Impacts Lung Cancer Response to PD-1 Blockade

scientific article published on 8 March 2018

Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing

scientific article

Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data

scientific article

Influenza a virus migration and persistence in North American wild birds

scientific article

Isolation, propagation, genome analysis and epidemiology of HKU1 betacoronaviruses

scientific article published on 06 January 2014

Large scale complete genome sequencing and phylodynamic analysis of eastern equine encephalitis virus reveal source-sink transmission dynamics in the United States

scientific article published on 4 April 2018

Microbiome disturbance and resilience dynamics of the upper respiratory tract in response to influenza A virus infection in analog hosts

article

Migration and persistence of human influenza A viruses, Vietnam, 2001-2008.

scientific article

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

scientific article published on 18 October 2011

Minimally Invasive Sampling Method Identifies Differences in Taxonomic Richness of Nasal Microbiomes in Young Infants Associated with Mode of Delivery.

scientific article published on 14 September 2015

Mixed infection and the genesis of influenza virus diversity

scientific article

Molecular Evolution and Intraclade Recombination of Enterovirus D68 during the 2014 Outbreak in the United States

scientific article published on 9 December 2015

Molecular Signature of High Yield (Growth) Influenza A Virus Reassortants Prepared as Candidate Vaccine Seeds ⬇️

scientific article published on June 11, 2013

Molecular analysis of H7 avian influenza viruses from Australia and New Zealand: genetic diversity and relationships from 1976 to 2007.

scientific article

Molecular characterization of a new species in the genus Alphacoronavirus associated with mink epizootic catarrhal gastroenteritis

scientific article

Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States

scientific article

Multiple introductions and antigenic mismatch with vaccines may contribute to increased predominance of G12P[8] rotaviruses in the United States ⬇️

scientific article published on 10 December 2018

Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses

scientific article published on 4 October 2017

Nasopharyngeal Lactobacillus is Associated with Childhood Wheezing Illnesses Following Acute Respiratory Syncytial Virus Infection in Infancy

scientific article published on 9 January 2018

North Atlantic migratory bird flyways provide routes for intercontinental movement of avian influenza viruses

scientific article

PB2 residue 158 is a pathogenic determinant of pandemic H1N1 and H5 influenza a viruses in mice

scientific article

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

scientific article published on 17 June 2015

Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012.

scientific article

Poor immunogenicity, not vaccine strain egg adaptation, may explain the low H3N2 influenza vaccine effectiveness in 2012-13.

scientific article published on 20 February 2018

Possible increased potency of current levothyroxine

scientific article published on December 2012

Quantifying influenza virus diversity and transmission in humans

scientific article

Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation

scientific article published on 16 April 2007

Rapid research response to the 2009 A(H1N1)pdm09 influenza pandemic (Revised).

scientific article

Reassortment of Influenza A Viruses in Wild Birds in Alaska before H5 Clade 2.3.4.4 Outbreaks

scientific article published on April 2017

Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene

scientific article published on 23 May 2016

Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus

scientific article

Sequence analysis of in vivo defective interfering-like RNA of influenza A H1N1 pandemic virus

scientific article

Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes

scientific article

Spike protein fusion peptide and feline coronavirus virulence.

scientific article

Spread and persistence of influenza A viruses in waterfowl hosts in the North American Mississippi migratory flyway

scientific article

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

scientific article

The contrasting phylodynamics of human influenza B viruses.

scientific article

The early diversification of influenza A/H1N1pdm. ⬇️

scientific article

The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States

scientific article published on 23 October 2017

The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua

scientific article published on 22 June 2014

The soft palate is an important site of adaptation for transmissible influenza viruses

scientific article

Universal influenza B virus genomic amplification facilitates sequencing, diagnostics, and reverse genetics

scientific article published on 05 February 2014

Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic.

scientific article

Viral genome sequencing by random priming methods.

scientific article

Where do all the subtypes go? Temporal dynamics of H8-H12 influenza A viruses in waterfowl

article by Michelle Wille et al published July 2018 in Virus Evolution

Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa

scientific article

Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa

scientific article

Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition

scientific article

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