List of works - Sodsai Tovanabutra

A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand

scientific article published in July 2003

Abundant HIV-infected cells in blood and tissues are rapidly cleared upon ART initiation during acute HIV infection

scientific article published on 01 March 2020

Adjuvanted HIV-1 vaccine promotes antibody-dependent phagocytic responses and protects against heterologous SHIV challenge

scientific article published on 03 September 2020

An Evaluation of Selected Populations for HIV-1 Vaccine Cohort Development in Nigeria

scientific article

An Investigation of Bloodborne Pathogen Transmission Due to Multipatient Sharing of Insulin Pens ⬇️

scientific article published on August 1, 2012

An effective tool for identifying HIV-1 subtypes B, C, CRF01_AE, their recombinant forms, and dual infections in Southeast Asia by the multi-region subtype specific PCR (MSSP) assay

scientific article published on 25 February 2015

Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial

scientific article

Antibody to HSV gD peptide induced by vaccination does not protect against HSV-2 infection in HSV-2 seronegative women

scientific article

Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines

scientific article

CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants.

scientific article

CTL epitope distribution patterns in the Gag and Nef proteins of HIV-1 from subtype A infected subjects in Kenya: use of multiple peptide sets increases the detectable breadth of the CTL response.

scientific article

Centralized HIV Program Oversight: An Investigation of a Case Series of New HIV Infections among US Army Soldiers, 2012 to 2013.

scientific article

Characteristics of HIV-infected U.S. Army soldiers linked in molecular transmission clusters, 2001-2012.

scientific article

Characterization of complete HIV type 1 genomes from non-B subtype infections in U.S. military personnel

scientific article

Circulating and unique recombinant forms of HIV type 1 containing subsubtype A2.

scientific article

Class I HLA-A*7401 is associated with protection from HIV-1 acquisition and disease progression in Mbeya, Tanzania

scientific article

Comparable Antigenicity and Immunogenicity of Oligomeric Forms of a Novel, Acute HIV-1 Subtype C gp145 Envelope for Use in Preclinical and Clinical Vaccine Research

scientific article published on 13 May 2015

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial

scientific article

Correction: Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection

scientific article published on 14 September 2017

Declining trend in transmitted drug resistance detected in a prospective cohort study of acute HIV infection in Bangkok, Thailand

scientific article published on 31 October 2016

Designing the epitope flanking regions for optimal generation of CTL epitopes.

scientific article published on 2 May 2014

Distinct circulating recombinant HIV-1 strains among injecting drug users and sex workers in Afghanistan

scientific article

Distinct human immunodeficiency virus type 1 subtype A virus circulating in West Africa: sub-subtype A3.

scientific article

Distinguishing molecular forms of HIV-1 in Asia with a high-throughput, fluorescent genotyping assay, MHAbce v.2.

scientific article

Drug use, increasing incarceration rates, and prison-associated HIV risks in Thailand ⬇️

scientific article published on June 1, 2003

Effect of cytokines on Siglec-1 and HIV-1 entry in monocyte-derived macrophages: the importance of HIV-1 envelope V1V2 region

scientific article published on 14 December 2015

Enhanced U.S. Army HIV Diagnostic Algorithm Used to Diagnose Acute HIV Infection in a Deployed Soldier ⬇️

scientific article published on May 1, 2012

Evaluation of HIV type 1 strains in men having sex with men and in female sex workers in Mombasa, Kenya

scientific article published in February 2010

Expansion of Inefficient HIV-Specific CD8 T Cells during Acute Infection

scientific article published on 3 February 2016

Factors influencing estimates of HIV-1 infection timing using BEAST

scientific article published on 01 February 2021

Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial ⬇️

scientific article published on February 27, 2011

HIV DNA Set Point is Rapidly Established in Acute HIV Infection and Dramatically Reduced by Early ART.

scientific article published on 20 July 2016

HIV Epidemic in Asia: Implications for HIV Vaccine and Other Prevention Trials

scientific article

HIV infection among female drug users in Northern Thailand

scientific article published on 8 December 2004

HIV prevalence and risks among injection and noninjection drug users in northern Thailand: need for comprehensive HIV prevention programs

scientific article

HIV type 1 molecular epidemiology among high-risk clients attending the Thai Red Cross Anonymous Clinic in Bangkok, Thailand

scientific article published in January 2010

HIV-1 Genetic Diversity Among Incident Infections in Mbeya, Tanzania

scientific article

HIV-1 genetic diversity and compartmentalization in mother/infant pairs infected with CRF01_AE

scientific article published on 01 May 2007

HIV-1 infections with multiple founders are associated with higher viral loads than infections with single founders

scientific article

Hepatitis C genotype distribution and homology among geographically disparate injecting drug users in Afghanistan ⬇️

scientific article published on July 1, 2013

Heterosexually acquired CRF01_AE/B recombinant HIV type 1 found in Thailand

scientific article published in November 2002

High HIV, hepatitis C and sexual risks among drug-using men who have sex with men in northern Thailand

scientific article published in September 2005

Humoral Response to the HIV-1 Envelope V2 Region in a Thai Early Acute Infection Cohort.

scientific article published on 19 April 2019

HyperPack: a software package for the study of levels, contexts, and patterns of APOBEC-mediated hypermutation in HIV.

scientific article published in April 2007

Identification of CRF34_01B, a second circulating recombinant form unrelated to and more complex than CRF15_01B, among injecting drug users in northern Thailand

scientific article published on June 2007

Identification of New Regions in HIV-1 gp120 Variable 2 and 3 Loops that Bind to α4β7 Integrin Receptor

scientific article published in December 2015

Impact of HIV-1 backbone on neutralization sensitivity: neutralization profiles of heterologous envelope glycoproteins expressed in native subtype C and CRF01_AE backbone

scientific article (publication date: 2013)

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies

scientific article

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

scientific article

Influence of the Envelope gp120 Phe 43 Cavity on HIV-1 Sensitivity to Antibody-Dependent Cell-Mediated Cytotoxicity Responses

scientific article published on 18 January 2017

Inhibition of HIV-1 infection of peripheral blood mononuclear cells by a monoclonal antibody that binds to phosphoinositides and induces secretion of β-chemokines ⬇️

scientific article published on October 30, 2010

Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual

scientific article published on 12 March 2019

Lost in translation: implications of HIV-1 codon usage for immune escape and drug resistance.

scientific article published on January 2004

Magnitude and breadth of the neutralizing antibody response in the RV144 and Vax003 HIV-1 vaccine efficacy trials

scientific article

Male viral load and heterosexual transmission of HIV-1 subtype E in northern Thailand

scientific article

Minor viral and host genetic polymorphisms can dramatically impact the biologic outcome of an epitope-specific CD8 T-cell response

scientific article published on 19 June 2009

Molecular Epidemiology of Early and Acute HIV Type 1 Infections in the United States Navy and Marine Corps, 2005–2010 ⬇️

scientific article published on October 1, 2013

Molecular dating and viral load growth rates suggested that the eclipse phase lasted about a week in HIV-1 infected adults in East Africa and Thailand

scientific article published on 06 February 2020

Molecular epidemiology of HIV Type 1 in preparation for a Phase III prime-boost vaccine trial in Thailand and a new approach to HIV Type 1 genotyping

scientific article published on 01 August 2006

Molecular epidemiology of a primarily MSM acute HIV-1 cohort in Bangkok, Thailand and connections within networks of transmission in Asia

article

Molecular evolution of the HIV-1 Thai epidemic between the time of RV144 immunogen selection to the execution of the vaccine efficacy trial

scientific article published on 10 April 2013

Natural killer cell-mediated innate sieve effect on HIV-1: the impact of KIR/HLA polymorphism on HIV-1 subtype-specific acquisition in east Africa

scientific article published on 06 August 2013

Nautilus: A Bioinformatics Package for the Analysis of HIV Type 1 Targeted Deep Sequencing Data ⬇️

scientific article published on August 2, 2013

Neutralization Sensitivity of a Novel HIV-1 CRF01_AE Panel of Infectious Molecular Clones

scientific article published on 8 March 2018

Neutralizing antibody VRC01 failed to select for HIV-1 mutations upon viral rebound

scientific article published on 17 March 2020

Next-generation sequencing of HIV-1 single genome amplicons

article

Pilot studies for development of an HIV subtype panel for surveillance of global diversity

scientific article

Predictors of low CD4 count in resource-limited settings: based on an antiretroviral-naive heterosexual thai population.

scientific article

Preferential Targeting of Conserved Gag Regions after Vaccination with a Heterologous DNA Prime-Modified Vaccinia Virus Ankara Boost HIV-1 Vaccine Regimen

scientific article

Production of Mucosally Transmissible SHIV Challenge Stocks from HIV-1 Circulating Recombinant Form 01_AE env Sequences

scientific article published on 5 February 2016

Prospective Study of Acute HIV-1 Infection in Adults in East Africa and Thailand

scientific article

Protective efficacy of a global HIV-1 mosaic vaccine against heterologous SHIV challenges in rhesus monkeys ⬇️

scientific article published on 24 October 2013

RV144 HIV-1 vaccination impacts post-infection antibody responses

scientific article published on 08 December 2020

Rapid HIV RNA rebound after antiretroviral treatment interruption in persons durably suppressed in Fiebig I acute HIV infection

article

Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection

scientific article published on 31 July 2017

RecDraw: a software package for the representation of HIV-1 recombinant structures.

scientific article

Safety and efficacy of VRC01 broadly neutralising antibodies in adults with acutely treated HIV (RV397): a phase 2, randomised, double-blind, placebo-controlled trial

scientific article published on 15 April 2019

Sieve analysis of breakthrough HIV-1 sequences in HVTN 505 identifies vaccine pressure targeting the CD4 binding site of Env-gp120.

scientific article published on 17 November 2017

Significant contribution of subtype G to HIV-1 genetic complexity in Nigeria identified by a newly developed subtyping assay specific for subtype G and CRF02_AG.

scientific article published on August 2016

Standardization of a cytometric p24-capture bead-assay for the detection of main HIV-1 subtypes

scientific article published on 22 January 2016

Targeted deep sequencing of HIV-1 using the IonTorrentPGM platform

scientific article

The Number and Complexity of Pure and Recombinant HIV-1 Strains Observed within Incident Infections during the HIV and Malaria Cohort Study Conducted in Kericho, Kenya, from 2003 to 2006

scientific article

The changing molecular epidemiology of HIV type 1 among northern Thai drug users, 1999 to 2002.

scientific article

Transfusion-transmitted human T-lymphotropic virus Type I infection in a United States military emergency whole blood transfusion recipient in Afghanistan, 2010.

scientific article published on 30 January 2013

Transfusion‐transmissible viral infections among US military recipients of whole blood and platelets during Operation Enduring Freedom and Operation Iraqi Freedom ⬇️

scientific article published on October 7, 2010

Two unique recombinant forms identified in incident HIV type 1 infections in Thai blood donors

scientific article

Unravelling the complicated evolutionary and dissemination history of HIV-1M subtype A lineages

scientific article published in January 2018

Use of dried blood spots for HIV-1 genotyping in Southeast Asia: Thailand experience

scientific article published on March 1, 2012

Vaccine-induced Human Antibodies Specific for the Third Variable Region of HIV-1 gp120 Impose Immune Pressure on Infecting Viruses

scientific article

Variable contexts and levels of hypermutation in HIV-1 proviral genomes recovered from primary peripheral blood mononuclear cells.

scientific article

Viral and host factors associated with the HIV-1 viral load setpoint in adults from Mbeya Region, Tanzania

scientific article

Virological and immunological characteristics of HIV-infected individuals at the earliest stage of infection

scientific article published on January 2016

W-curve alignments for HIV-1 genomic comparisons

scientific article

List of works by Sodsai Tovanabutra

A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand

Abundant HIV-infected cells in blood and tissues are rapidly cleared upon ART initiation during acute HIV infection

Adjuvanted HIV-1 vaccine promotes antibody-dependent phagocytic responses and protects against heterologous SHIV challenge

An Evaluation of Selected Populations for HIV-1 Vaccine Cohort Development in Nigeria

An Investigation of Bloodborne Pathogen Transmission Due to Multipatient Sharing of Insulin Pens ⬇️

An effective tool for identifying HIV-1 subtypes B, C, CRF01_AE, their recombinant forms, and dual infections in Southeast Asia by the multi-region subtype specific PCR (MSSP) assay

Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial

Antibody to HSV gD peptide induced by vaccination does not protect against HSV-2 infection in HSV-2 seronegative women

Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines

CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants.

CTL epitope distribution patterns in the Gag and Nef proteins of HIV-1 from subtype A infected subjects in Kenya: use of multiple peptide sets increases the detectable breadth of the CTL response.

Centralized HIV Program Oversight: An Investigation of a Case Series of New HIV Infections among US Army Soldiers, 2012 to 2013.

Characteristics of HIV-infected U.S. Army soldiers linked in molecular transmission clusters, 2001-2012.

Characterization of complete HIV type 1 genomes from non-B subtype infections in U.S. military personnel

Circulating and unique recombinant forms of HIV type 1 containing subsubtype A2.

Class I HLA-A*7401 is associated with protection from HIV-1 acquisition and disease progression in Mbeya, Tanzania

Comparable Antigenicity and Immunogenicity of Oligomeric Forms of a Novel, Acute HIV-1 Subtype C gp145 Envelope for Use in Preclinical and Clinical Vaccine Research

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial

Correction: Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection

Declining trend in transmitted drug resistance detected in a prospective cohort study of acute HIV infection in Bangkok, Thailand

Designing the epitope flanking regions for optimal generation of CTL epitopes.

Distinct circulating recombinant HIV-1 strains among injecting drug users and sex workers in Afghanistan

Distinct human immunodeficiency virus type 1 subtype A virus circulating in West Africa: sub-subtype A3.

Distinguishing molecular forms of HIV-1 in Asia with a high-throughput, fluorescent genotyping assay, MHAbce v.2.

Drug use, increasing incarceration rates, and prison-associated HIV risks in Thailand ⬇️

Effect of cytokines on Siglec-1 and HIV-1 entry in monocyte-derived macrophages: the importance of HIV-1 envelope V1V2 region

Enhanced U.S. Army HIV Diagnostic Algorithm Used to Diagnose Acute HIV Infection in a Deployed Soldier ⬇️

Evaluation of HIV type 1 strains in men having sex with men and in female sex workers in Mombasa, Kenya

Expansion of Inefficient HIV-Specific CD8 T Cells during Acute Infection

Factors influencing estimates of HIV-1 infection timing using BEAST

Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial ⬇️

HIV DNA Set Point is Rapidly Established in Acute HIV Infection and Dramatically Reduced by Early ART.

HIV Epidemic in Asia: Implications for HIV Vaccine and Other Prevention Trials

HIV infection among female drug users in Northern Thailand

HIV prevalence and risks among injection and noninjection drug users in northern Thailand: need for comprehensive HIV prevention programs

HIV type 1 molecular epidemiology among high-risk clients attending the Thai Red Cross Anonymous Clinic in Bangkok, Thailand

HIV-1 Genetic Diversity Among Incident Infections in Mbeya, Tanzania

HIV-1 genetic diversity and compartmentalization in mother/infant pairs infected with CRF01_AE

HIV-1 infections with multiple founders are associated with higher viral loads than infections with single founders

Hepatitis C genotype distribution and homology among geographically disparate injecting drug users in Afghanistan ⬇️

Heterosexually acquired CRF01_AE/B recombinant HIV type 1 found in Thailand

High HIV, hepatitis C and sexual risks among drug-using men who have sex with men in northern Thailand

Humoral Response to the HIV-1 Envelope V2 Region in a Thai Early Acute Infection Cohort.

HyperPack: a software package for the study of levels, contexts, and patterns of APOBEC-mediated hypermutation in HIV.

Identification of CRF34_01B, a second circulating recombinant form unrelated to and more complex than CRF15_01B, among injecting drug users in northern Thailand

Identification of New Regions in HIV-1 gp120 Variable 2 and 3 Loops that Bind to α4β7 Integrin Receptor

Impact of HIV-1 backbone on neutralization sensitivity: neutralization profiles of heterologous envelope glycoproteins expressed in native subtype C and CRF01_AE backbone

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

Influence of the Envelope gp120 Phe 43 Cavity on HIV-1 Sensitivity to Antibody-Dependent Cell-Mediated Cytotoxicity Responses

Inhibition of HIV-1 infection of peripheral blood mononuclear cells by a monoclonal antibody that binds to phosphoinositides and induces secretion of β-chemokines ⬇️

Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual

Lost in translation: implications of HIV-1 codon usage for immune escape and drug resistance.

Magnitude and breadth of the neutralizing antibody response in the RV144 and Vax003 HIV-1 vaccine efficacy trials

Male viral load and heterosexual transmission of HIV-1 subtype E in northern Thailand

Minor viral and host genetic polymorphisms can dramatically impact the biologic outcome of an epitope-specific CD8 T-cell response

Molecular Epidemiology of Early and Acute HIV Type 1 Infections in the United States Navy and Marine Corps, 2005–2010 ⬇️

Molecular dating and viral load growth rates suggested that the eclipse phase lasted about a week in HIV-1 infected adults in East Africa and Thailand

Molecular epidemiology of HIV Type 1 in preparation for a Phase III prime-boost vaccine trial in Thailand and a new approach to HIV Type 1 genotyping

Molecular epidemiology of a primarily MSM acute HIV-1 cohort in Bangkok, Thailand and connections within networks of transmission in Asia

Molecular evolution of the HIV-1 Thai epidemic between the time of RV144 immunogen selection to the execution of the vaccine efficacy trial

Natural killer cell-mediated innate sieve effect on HIV-1: the impact of KIR/HLA polymorphism on HIV-1 subtype-specific acquisition in east Africa

Nautilus: A Bioinformatics Package for the Analysis of HIV Type 1 Targeted Deep Sequencing Data ⬇️

Neutralization Sensitivity of a Novel HIV-1 CRF01_AE Panel of Infectious Molecular Clones

Neutralizing antibody VRC01 failed to select for HIV-1 mutations upon viral rebound

Next-generation sequencing of HIV-1 single genome amplicons

Pilot studies for development of an HIV subtype panel for surveillance of global diversity

Predictors of low CD4 count in resource-limited settings: based on an antiretroviral-naive heterosexual thai population.

Preferential Targeting of Conserved Gag Regions after Vaccination with a Heterologous DNA Prime-Modified Vaccinia Virus Ankara Boost HIV-1 Vaccine Regimen

Production of Mucosally Transmissible SHIV Challenge Stocks from HIV-1 Circulating Recombinant Form 01_AE env Sequences

Prospective Study of Acute HIV-1 Infection in Adults in East Africa and Thailand

Protective efficacy of a global HIV-1 mosaic vaccine against heterologous SHIV challenges in rhesus monkeys ⬇️

RV144 HIV-1 vaccination impacts post-infection antibody responses

Rapid HIV RNA rebound after antiretroviral treatment interruption in persons durably suppressed in Fiebig I acute HIV infection

Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection

RecDraw: a software package for the representation of HIV-1 recombinant structures.

Safety and efficacy of VRC01 broadly neutralising antibodies in adults with acutely treated HIV (RV397): a phase 2, randomised, double-blind, placebo-controlled trial

Sieve analysis of breakthrough HIV-1 sequences in HVTN 505 identifies vaccine pressure targeting the CD4 binding site of Env-gp120.

Significant contribution of subtype G to HIV-1 genetic complexity in Nigeria identified by a newly developed subtyping assay specific for subtype G and CRF02_AG.