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List of works by Christian Schlötterer

A 24 h Age Difference Causes Twice as Much Gene Expression Divergence as 100 Generations of Adaptation to a Novel Environment

article

A genome-wide, fine-scale map of natural pigmentation variation in Drosophila melanogaster.

scientific article

A guide for the design of evolve and resequencing studies

scientific article

A major bristle QTL from a selected population of Drosophila uncovers the zinc-finger transcription factor poils-au-dos, a repressor of achaete-scute.

scientific article published on 10 October 2005

A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila

scientific article published on 20 August 2018

A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila

Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

scientific article

African Drosophila melanogaster and D. simulans populations have similar levels of sequence variability, suggesting comparable effective population sizes

scientific article published on January 2008

Allele excess at neutrally evolving microsatellites and the implications for tests of neutrality

scientific article published on 01 April 2004

Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data.

scientific article

Ancestral population reconstitution from isofemale lines as a tool for experimental evolution

scientific article published on 30 August 2016

Author Correction: Polygenic adaptation: a unifying framework to understand positive selection

scientific article published on 06 August 2020

Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies

scientific article published on 15 August 2019

CANGS DB: a stand-alone web-based database tool for processing, managing and analyzing 454 data in biodiversity studies

scientific article

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies

scientific article

Clear: Composition of Likelihoods for Evolve and Resequence Experiments.

scientific article

Contesting the evidence for non-adaptive plasticity

scientific article published in Nature

Contrasting patterns of natural variation in global Drosophila melanogaster populations

scientific article

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

scientific article

Correction: Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element ⬇️

scientific article published on 11 May 2016

Correction: Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling.

scientific article published on 9 October 2009

DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species

scientific article published in 2019

Detecting selected haplotype blocks in Evolve and Resequence experiments

scientific article published on 18 August 2020

Detecting selective sweeps from pooled next-generation sequencing samples.

scientific article

Detecting selective sweeps: a new approach based on hidden markov models.

scientific article published on 9 February 2009

Developmental stability: a major role for cyclin G in drosophila melanogaster

scientific article

DistMap: a toolkit for distributed short read mapping on a Hadoop cluster

scientific article

Distinct patterns of selective sweep and polygenic adaptation in evolve and re-sequence studies

scientific article published on 13 April 2020

Distinguishing positive selection from neutral evolution: boosting the performance of summary statistics.

scientific article published on November 2010

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

scientific article

Drosophila simulans: A Species with Improved Resolution in Evolve and Resequence Studies

scientific article published on 25 May 2017

Estimating empirical codon hidden Markov models

scientific article published on 27 November 2012

Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution.

scientific article published on 19 August 2016

Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura

scientific article

Evolution of longevity improves immunity in

scientific article published on 12 November 2018

Evolution of phenotypic variance in response to a novel hot environment

scientific article published in 2021

Experimental evolution reveals habitat-specific fitness dynamics among Wolbachia clades in Drosophila melanogaster

scientific article

Expression profiling of Drosophila mitochondrial genes via deep mRNA sequencing.

scientific article published on December 2009

Extensive paternal mtDNA leakage in natural populations of Drosophila melanogaster

scientific article published on 4 March 2013

Fitness effects for Ace insecticide resistance mutations are determined by ambient temperature

scientific article published on 30 October 2020

Gene expression profiling by massively parallel sequencing.

scientific article

Genealogical lineage sorting leads to significant, but incorrect Bayesian multilocus inference of population structure.

scientific article

Genetic redundancy fuels polygenic adaptation in Drosophila

scientific article published on 04 February 2019

Genome assembly and annotation of a Drosophila simulans strain from Madagascar

scientific article

Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America

scientific article

Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana

scientific article

Genomic resources notes accepted 1 August 2014-30 September 2014.

scientific article published on 25 November 2014

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

scientific article

High rate of translocation-based gene birth on the Drosophila Y chromosome

scientific article published on 19 October 2017

High rates of phasing errors in highly polymorphic species with low levels of linkage disequilibrium.

scientific article

High-throughput fecundity measurements in Drosophila.

scientific article

Highly structured Asian Drosophila melanogaster populations: a new tool for hitchhiking mapping?

scientific article

Host range and specificity of the Drosophila C virus

scientific article

Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element ⬇️

scientific article

Identification of selective sweeps using a dynamically adjusted number of linked microsatellites

scientific article published on 22 October 2006

Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations of Drosophila melanogaster

scientific article

Intra-specific regulatory variation in Drosophila pseudoobscura

scientific article

Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

scientific article published on August 2013

Long-Term Dynamics Among Wolbachia Strains During Thermal Adaptation of Their Drosophila melanogaster Hosts

scientific article published on 14 May 2020

Low concordance of short-termand long-term selection responses in experimental Drosophila populations

scientific article published on 06 August 2020

Male-biased genes are overrepresented among novel Drosophila pseudoobscura sex-biased genes

scientific article

Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling

scientific article

Massive habitat-specific genomic response in D. melanogaster populations during experimental evolution in hot and cold environments

scientific article

Molecular dissection of a natural transposable element invasion

scientific article published on 30 April 2018

Neuronal function and dopamine signaling evolve at high temperature in Drosophila

scientific article published on 13 May 2020

Next-generation biological control: the need for integrating genetics and genomics

scientific article published on 14 August 2020

No accelerated rate of protein evolution in male-biased Drosophila pseudoobscura genes

scientific article

Non-random genomic integration - an intrinsic property of retrogenes in Drosophila?

scientific article

Nonneutral admixture of immigrant genotypes in African Drosophila melanogaster populations from Zimbabwe

scientific article published on 30 May 2003

Nonrandom Wolbachia infection status of Drosophila melanogaster strains with different mtDNA haplotypes

scientific article published on 09 September 2008

PanGEA: identification of allele specific gene expression using the 454 technology.

scientific article published on 14 May 2009

Parallel gene expression evolution in natural and laboratory evolved populations

scientific article published on 26 September 2020

Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations.

scientific article published on 17 June 2015

Patterns of linkage disequilibrium and long range hitchhiking in evolving experimental Drosophila melanogaster populations

scientific article

Phenotypic plasticity in Drosophila pigmentation caused by temperature sensitivity of a chromatin regulator network

scientific article

Pleiotropic effects of regulatory variation in tan result in correlation of two pigmentation traits in Drosophila melanogaster

scientific article published on 29 June 2018

PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila.

scientific article

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

scientific article published on 23 October 2011

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

scientific article

Polygenic adaptation: a unifying framework to understand positive selection

scientific article published on 29 June 2020

Polymorphism-aware protein databases - a prerequisite for an unbiased proteomic analysis of natural populations.

scientific article published on 28 January 2017

Pool-GWAS on reproductive dormancy in Drosophila simulans suggests a polygenic architecture

scientific article published on 01 March 2022

Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples

scientific article

Population structure in African Drosophila melanogaster revealed by microsatellite analysis

scientific article

Quantifying Selection with Pool-Seq Time Series Data

scientific article published on 21 August 2017

Rapid sex-specific adaptation to high temperature in Drosophila

scientific article published on 21 February 2020

Reconciling Differences in Pool-GWAS Between Populations: A Case Study of Female Abdominal Pigmentation in Drosophila melanogaster

scientific article published on 29 December 2015

Reconstruction of Haplotype-Blocks Selected during Experimental Evolution

scientific article

Regulation of transposable elements: Interplay between TE-encoded regulatory sequences and host-specific trans-acting factors in Drosophila melanogaster

scientific article published on 25 July 2017

SciRoKo: a new tool for whole genome microsatellite search and investigation

scientific article published on 26 April 2007

Secondary Evolve and Resequencing: An Experimental Confirmation of Putative Selection Targets without Phenotyping

scientific article published on 01 March 2020

Segregating Variation in the Polycomb Group Gene cramped Alters the Effect of Temperature on Multiple Traits ⬇️

scientific article published on January 20, 2011

Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster

scientific article

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

scientific article

Shifting the paradigm in Evolve and Resequence studies: From analysis of single nucleotide polymorphisms to selected haplotype blocks

scientific article published on 01 February 2019

Strong epistatic and additive effects of linked candidate SNPs for Drosophila pigmentation have implications for analysis of genome-wide association studies results

scientific article

Suitability of Different Mapping Algorithms for Genome-wide Polymorphism Scans with Pool-Seq Data

scientific article (publication date: 12 September 2016)

Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites

scientific article

Temperature stress mediates decanalization and dominance of gene expression in Drosophila melanogaster

scientific article

Temperature-Related Reaction Norms of Gene Expression: Regulatory Architecture and Functional Implications

scientific article

Tempo and Mode of Transposable Element Activity in Drosophila

scientific article published on 17 July 2015

The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster

scientific article published on 20 July 2016

The evolution of phenotypic plasticity in response to temperature stress

scientific article published on 06 October 2020

The horse Y chromosome as an informative marker for tracing sire lines

scientific article published on 15 April 2019

The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data

scientific article

The life cycle of Drosophila orphan genes

scientific article published in 2014

The next generation of molecular markers from massively parallel sequencing of pooled DNA samples

scientific article published on 10 May 2010

The recent invasion of natural Drosophila simulans populations by the P-element ⬇️

scientific article published on 11 May 2015

Variation in thermal performance and reaction norms among populations of Drosophila melanogaster.

scientific article published on 26 August 2013

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