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List of works by Alessia Lai

An outbreak of HIV-1 BC recombinants in Southern Italy

scientific article published on 13 September 2012

BAYESIAN RECONSTRUCTION OF THE EVOLUTIONARY HISTORY AND CROSS-SPECIES TRANSITION OF VARIOLA VIRUS AND ORTHOPOXVIRUSES.

scientific article published on 15 February 2018

Bayesian phylogeography of Crimean-Congo hemorrhagic fever virus in Europe

scientific article

Chikungunya virus, epidemiology, clinics and phylogenesis: A review

scientific article

Circulation of HIV-1 CRF02_AG among MSM population in central Italy: a molecular epidemiology-based study

scientific article published on 28 November 2013

Contribution of transgender sex workers to the complexity of the HIV-1 epidemic in the metropolitan area of Milan

scientific article published on 03 January 2020

Dating the origin and dispersal of Human Papillomavirus type 16 on the basis of ancestral human migrations

scientific article published on 28 January 2016

Distribution of Marburg virus in Africa: An evolutionary approach

scientific article

Early Phylogenetic Estimate Of The Effective Reproduction Number Of 2019-nCoV

scientific article

Early phylogenetic estimate of the effective reproduction number of SARS-CoV-2

scientific article published on 25 February 2020

Epidemiological history and phylogeography of West Nile virus lineage 2.

scientific article published on 29 March 2013

First epidemiological and phylogenetic analysis of Hepatitis B virus infection in migrants from Mali

scientific article published on 30 August 2016

GENOMIC CHARACTERISATION AND PHYLOGENETIC ANALYSIS OF SARS-COV-2 IN ITALY

scientific article (preprint)

Genetic diversity in Ebola virus: Phylogenetic and in silico structural studies of Ebola viral proteins

scientific article published on 9 March 2016

Genetic diversity of HIV type 1 in Montenegro

scientific article published on 31 December 2010

Genetic diversity of hepatitis B virus (HBV) in Madagascar

scientific article published on 16 May 2016

Genetic diversity of the haemagglutinin (HA) of human influenza a (H1N1) virus in montenegro: Focus on its origin and evolution

scientific article

Genetic drift influenza A(H3N2) virus hemagglutinin (HA) variants originated during the last pandemic turn out to be predominant in the 2011-2012 season in Northern Italy

scientific article

Genomic characterization and phylogenetic analysis of SARS-COV-2 in Italy

scientific article published on 29 March 2020

Genotype I hepatitis A virus introduction in Italy: Bayesian phylogenetic analysis to date different epidemics

article

HIV-1 A1 Subtype Epidemic in Italy Originated from Africa and Eastern Europe and Shows a High Frequency of Transmission Chains Involving Intravenous Drug Users

scientific article

HIV-1 recombinant forms in immigrants regularly residing in Milan, northern Italy

scientific article published on 19 May 2020

HIV-1 subtype C transmission network: the phylogenetic reconstruction strongly supports the epidemiological data

scientific article

HIV-1 subtype F1 epidemiological networks among Italian heterosexual males are associated with introduction events from South America ⬇️

scientific article

Hepatitis B virus genotype and subgenotype prevalence and distribution in Montenegro

scientific article published on 24 February 2015

Hepatitis C virus genotype 3A in a population of injecting drug users in Montenegro: Bayesian and evolutionary analysis

scientific article published on 13 February 2017

High burden of transmitted HIV-1 drug resistance in Italian patients carrying F1 subtype

article

Identification of a new HIV-1 BC circulating recombinant form (CRF60_BC) in Italian young men having sex with men.

scientific article published on 3 March 2014

Identification of a possible ancestor of the subtype A1 HIV Type 1 variant circulating in the former Soviet Union

scientific article published in October 2008

Impact of HCV eradication with direct-acting antiviral agents on serum gamma globulin levels in HCV and HCV/HIV coinfected patients

scientific article published on 21 January 2020

Impact of spatial dispersion, evolution, and selection on Ebola Zaire Virus epidemic waves

scientific article

Local Epidemics Gone Viral: Evolution and Diffusion of the Italian HIV-1 Recombinant Form CRF60_BC

article

Local and global spatio-temporal dynamics of HIV-1 subtype F1.

scientific article published on 12 October 2013

MALDI-TOF MS Identification and Clustering Applied to Species in Nosocomial Setting

scientific article published on 14 August 2018

Measles re-emergence in Northern Italy: Pathways of measles virus genotype D8, 2013-2014.

scientific article published on 15 December 2016

Molecular Tracing of SARS-CoV-2 in Italy in the First Three Months of the Epidemic

scientific article published on 24 July 2020

No impact of previous NRTIs resistance in HIV positive patients switched to DTG+2NRTIs under virological control: Time of viral suppression makes the difference

scientific article published on 17 October 2019

Origin and evolution of Nipah virus

scientific article

Origin and evolutionary dynamics of Hepatitis B virus (HBV) genotype E in Madagascar.

scientific article published on 12 January 2017

Origin, evolution, and phylogeography of recent epidemic CHIKV strains

scientific article

Outbreak of acute hepatitis A associated with men who have sex with men (MSM) in North Sardinia 2017-2018

scientific article published on 30 September 2020

Performance of Geno2Pheno[coreceptor] to infer coreceptor use in human immunodeficiency virus type 1 (HIV-1) subtype A

article

Performance of the COVID-19 SEROSpeed IgM/IgG Rapid Test, an immunochromatographic assay for the diagnosis of SARS-CoV-2 infection: a multicenter European study

scientific article published on 20 November 2020

Phylogenetic Analysis of Human Immunodeficiency Virus Type 2 Group B.

scientific article published on July 2016

Phylogenetic Analysis of Multi-Drug Resistant Klebsiella pneumoniae Strains From Duodenoscope Biofilm: Microbiological Surveillance and Reprocessing Improvements for Infection Prevention

scientific article published on 06 August 2019

Phylogenetic analysis of HCV-4d in Turkey: the curious case of Kayseri province

scientific article published on 16 October 2013

Phylogenetic analysis of HIV type 1 CRF02_AG in multiple genes in Italian and African patients living in Italy.

scientific article published on 10 July 2014

Phylogenetic analysis provides evidence of interactions between Italian heterosexual and South American homosexual males as the main source of national HIV-1 subtype C epidemics

scientific article published on 31 January 2014

Phylogeny of Dengue and Chikungunya viruses in Al Hudayda governorate, Yemen

scientific article published on 23 August 2014

Phylogeny of Murray Valley encephalitis virus in Australia and Papua New Guinea

scientific article

Phylogeographic reconstruction of HIV type 1B in Montenegro and the Balkan region

scientific article published on 3 April 2012

Phylogeography and phylodynamics of European genotype 3 hepatitis E virus

scientific article published on 28 April 2014

Population dynamics of HIV-1 subtype B in a cohort of men-having-sex-with-men in Rome, Italy

scientific article published in October 2010

Prevalence and factors associated with HIV-1 multidrug resistance over the past two decades in the Italian Arca database

scientific article published on 28 November 2020

Rapid molecular evolution of human bocavirus revealed by Bayesian coalescent inference

scientific article

Recombination analysis and structure prediction show correlation between breakpoint clusters and RNA hairpins in the pol gene of human immunodeficiency virus type 1 unique recombinant forms

scientific article published in December 2008

Reconstruction of the evolutionary dynamics of hepatitis C virus subtypes in Montenegro and the Balkan region

scientific article published on 18 April 2013

Reconstruction of the evolutionary dynamics of the A(H1N1)pdm09 influenza virus in Italy during the pandemic and post-pandemic phases

scientific article

Recurrence of another hepatitis B virus escape mutant comes back in a patient infected with HIV and low CD4+ count

scientific article published on 5 September 2013

Reliable timescale inference of HBV genotype A origin and phylodynamics

scientific article published on 14 March 2015

Retreatment of chronic hepatitis C virus infection after unsuccessful therapy with all-oral direct-acting antiviral regimens: a real-life experience

scientific article published on 4 September 2017

SARS-CoV-2 seroprevalence trends in healthy blood donors during the COVID-19 Milan outbreak

scientific article published on 18 May 2020

Spatial and temporal dynamics of hepatitis B virus D genotype in Europe and the Mediterranean Basin

scientific article

Telbivudine in the treatment of chronic hepatitis B: experience in HIV type-1-infected patients naive for antiretroviral therapy

scientific article published in January 2009

The phylogenetic approach for viral infectious disease evolution and epidemiology: An updating review

scientific article published on 12 July 2019

Transmission of resistant HIV type 1 variants and epidemiological chains in Italian newly diagnosed individuals

scientific article

Transmitted HIV Type 1 Drug Resistance and Non-B Subtypes Prevalence among Seroconverters and Newly Diagnosed Patients from 1992 to 2005 in Italy

article

What is changed in HBV molecular epidemiology in Italy?

scientific article published on 9 January 2018

Whole-genome sequencing of Klebsiella pneumoniae MDR strain isolated in a Syrian refugee

scientific article published on 12 April 2017

Zika Virus spreading in South America: Evolutionary analysis of emerging neutralizing resistant Phe279Ser strains

scientific article

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