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List of works by Philip T L C Clausen

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

scientific article

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

scientific article published on 08 March 2019

Improved ontology for eukaryotic single-exon coding sequences in biological databases

scientific article published on 01 January 2018

LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences

scientific article published on 01 June 2019

MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

scientific article published on 21 April 2021

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

scientific article published on 06 April 2022

Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks

scientific article published on 21 January 2020

Rapid and precise alignment of raw reads against redundant databases with KMA

scientific article published on 29 August 2018

ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

scientific article published in 2022

Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining

scientific article published in 2022

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