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List of works by Joshua J Coon

A Genetic Toggle for Chemical Control of Individual Plk1 Substrates

scientific article published on 03 February 2020

A Proteomics Search Algorithm Specifically Designed for High-Resolution Tandem Mass Spectra ⬇️

scientific article published on January 31, 2013

A Single Kinase Generates the Majority of the Secreted Phosphoproteome

scientific article

A Split-Abl Kinase for Direct Activation in Cells

scientific article

A bacterial biosynthetic pathway for methylated furan fatty acids

scientific article published on 20 May 2020

A calibration routine for efficient ETD in large-scale proteomics

scientific article published on 26 June 2015

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast ⬇️

scientific article published on July 19, 2011

A large-scale genome-lipid association map guides lipid identification

scientific article published on 21 September 2020

A molecular portrait of de novo genes in yeasts

scientific article

A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies

scientific article published on 21 November 2020

A new probabilistic database search algorithm for ETD spectra

scientific article published on June 2009

A proteogenomic survey of the Medicago truncatula genome

scientific article

A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti.

scientific article published on 17 October 2016

A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.

scientific article

A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis

scientific article

A role for the mevalonate pathway in early plant symbiotic signaling.

scientific article

Absence of Vitamin K-Dependent γ-Carboxylation in Human Periostin Extracted from Fibrotic Lung or Secreted from a Cell Line Engineered to Optimize γ-Carboxylation

scientific article published on 14 August 2015

Accelerating Lipidomic Method Development through in Silico Simulation

scientific article published on 25 July 2019

Acetyl-CoA flux regulates the proteome and acetyl-proteome to maintain intracellular metabolic crosstalk

scientific article published on 02 September 2019

Activated Ion Electron Transfer Dissociation for Improved Fragmentation of Intact Proteins

scientific article published on 26 June 2015

Activated Ion-Electron Transfer Dissociation Enables Comprehensive Top-Down Protein Fragmentation.

scientific article published on 13 June 2017

Activated ion ETD performed in a modified collision cell on a hybrid QLT-Oribtrap mass spectrometer.

scientific article published on 16 May 2013

Activated-ion electron transfer dissociation improves the ability of electron transfer dissociation to identify peptides in a complex mixture

scientific article

Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation

scientific article published on 23 July 2013

An Autophagy-Independent Role for ATG41 in Sulfur Metabolism During Zinc Deficiency

scientific article published on 10 January 2018

An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis

scientific article published on 17 January 2019

Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification

scientific article

Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry.

scientific article published in March 2012

Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration

scientific article published on 01 October 2020

Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification.

scientific article

Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams

scientific article published on 14 April 2020

Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams

scientific article published on 26 January 2020

Author Correction: Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development

scientific article published in Scientific Reports

Automated gas-phase purification for accurate, multiplexed quantification on a stand-alone ion-trap mass spectrometer

scientific article published on 24 October 2012

Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes

scientific article published on 23 March 2020

COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA

scientific article

Caloric Restriction Engages Hepatic RNA Processing Mechanisms in Rhesus Monkeys

scientific article published in March 2018

Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome

scientific article published on 29 November 2012

Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis

scientific article published on 21 March 2019

Cascade Dissociations of Peptide Cation-Radicals. Part 1. Scope and Effects of Amino Acid Residues in Penta-, Nona-, and Decapeptides ⬇️

scientific article published on June 6, 2012

Cascade Dissociations of Peptide Cation-Radicals. Part 2. Infrared Multiphoton Dissociation and Mechanistic Studies of z-Ions from Pentapeptides ⬇️

scientific article published on June 6, 2012

Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity

scientific article

Characterization and Quantification of Intact 26S Proteasome Proteins by Real-Time Measurement of Intrinsic Fluorescence Prior to Top-down Mass Spectrometry ⬇️

scientific article published on March 11, 2013

Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation.

scientific article

Characterization of Molecules Binding to the 70K N-Terminal Region of Fibronectin by IFAST Purification Coupled with Mass Spectrometry ⬇️

scientific article published on June 21, 2013

Characterizing Peptide Neutral Losses Induced by Negative Electron-Transfer Dissociation (NETD) ⬇️

scientific article published on April 1, 2012

Chemical derivatization of peptide carboxyl groups for highly efficient electron transfer dissociation

scientific article published on 06 August 2013

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast

scientific article published on 12 January 2018

Coenzyme Q biosynthetic proteins assemble in a substrate-dependent manner into domains at ER-mitochondria contacts

scientific article published on 23 January 2019

Comparative functional genomics identifies an iron-limited bottleneck in a <i>Saccharomyces cerevisiae</i> strain with a cytosolic-localized isobutanol pathway

scientific article published on 18 March 2022

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032.

scientific article

Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer

scientific article published on 18 July 2018

Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain

scientific article

Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family.

scientific article published on 24 November 2017

Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories

scientific article published on 01 November 2020

Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

scientific article published on 9 November 2016

Coupling capillary zone electrophoresis with electron transfer dissociation and activated ion electron transfer dissociation for top-down proteomics

scientific article published on 6 May 2015

Covalent modification of the NF-κB essential modulator (NEMO) by a chemical compound can regulate its ubiquitin binding properties in vitro

scientific article

Decision tree-driven tandem mass spectrometry for shotgun proteomics

scientific article published on 19 October 2008

Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress

scientific article published on 02 August 2018

Development and Characterization of a GC-Enabled QLT-Orbitrap for High-Resolution and High-Mass Accuracy GC/MS ⬇️

scientific article published on October 15, 2010

Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization

scientific article

Development of a GC/Quadrupole-Orbitrap mass spectrometer, part II: new approaches for discovery metabolomics

scientific article

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae.

scientific article

Discovering How Heme Controls Genome Function Through Heme-omics

scientific article published on 01 June 2020

Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer

scientific article published on 15 September 2007

Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures

scientific article

Enhanced Dissociation of Intact Proteins with High Capacity Electron Transfer Dissociation.

scientific article

Erythropoietin signaling regulates heme biosynthesis

scientific article

Established Biomarkers of Chronic Obstructive Pulmonary Disease Reflect Skeletal Muscle Integrity's Response to Exercise in an Animal Model of Pulmonary Emphysema

scientific article published on 01 August 2020

Expression of novel "LOCGEF" isoforms of ARHGEF18 in eosinophils

scientific article published on 30 March 2018

F-box protein FBXL16 binds PP2A-B55α and regulates differentiation of embryonic stem cells along the FLK1+ lineage

scientific article

Formic-acid-induced depolymerization of oxidized lignin to aromatics

scientific article published on 2 November 2014

Full-Featured Search Algorithm for Negative Electron-Transfer Dissociation.

scientific article published on 12 July 2016

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

scientific article

Gender Diversity in a STEM Subfield - Analysis of a Large Scientific Society and Its Annual Conferences

scientific article

Genetic determinants of gut microbiota composition and bile acid profiles in mice

scientific article published on 29 August 2019

Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research

scientific article published on 20 April 2016

Genome Wide Phosphoproteome Analysis of Zymomonas mobilis Under Anaerobic, Aerobic, and N2-Fixing Conditions

scientific article published on 04 September 2019

Global Phosphoproteome Analysis Using High-Field Asymmetric Waveform Ion Mobility Spectrometry on a Hybrid Orbitrap Mass Spectrometer

scientific article published on 03 December 2020

Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition.

scientific article

High-resolution filtering for improved small molecule identification via GC/MS.

scientific article published on 20 July 2015

Higher-energy collision-activated dissociation without a dedicated collision cell

scientific article

Human Pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs

scientific article

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

scholarly article

Identification and validation of urinary biomarkers for differential diagnosis and evaluation of therapeutic intervention in anti-neutrophil cytoplasmic antibody-associated vasculitis

scientific article

Identification of the phosphorylation targets of symbiotic receptor-like kinases using a high-throughput multiplexed assay for kinase specificity

scientific article

Identifying Novel Signaling Pathways: An Exercise Scientists Guide to Phosphoproteomics.

scientific article published on 15 January 2018

Identifying post-translational modifications of NEMO by tandem mass spectrometry after high affinity purification

scientific article published on 6 September 2013

Implementation of Activated Ion Electron Transfer Dissociation on a Quadrupole-Orbitrap-Linear Ion Trap Hybrid Mass Spectrometer

scientific article

Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer

scientific article

Improved Precursor Characterization for Data-Dependent Mass Spectrometry

scientific article published on 22 December 2017

In vacuo formation of peptide-metal coordination complexes

scientific article published on October 2008

Influenza virus recruits host protein kinase C to control assembly and activity of its replication machinery

scientific article

Infrared Multiphoton Dissociation for Quantitative Shotgun Proteomics ⬇️

scientific article published on April 23, 2012

Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate

scientific article (publication date: 2016)

Instant spectral assignment for advanced decision tree-driven mass spectrometry

scientific article

Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase

scientific article published on 24 May 2017

Intelligent data acquisition blends targeted and discovery methods

scientific article

Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events

scientific article published in November 2010

Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications

scientific article published on 14 May 2019

Ion-Ion Reactions with Fixed-Charge Modified Proteins to Produce Ions in a Single, Very High Charge State

scientific article published on October 2008

Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion

scientific article published on 01 March 2018

Large-Scale Multi-omic Analysis of COVID-19 Severity

scientific article published on 08 October 2020

Large-scale Multi-omic Analysis of COVID-19 Severity

scientific article published on 19 July 2020

Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes

scientific article

Learning Drug Functions from Chemical Structures with Convolutional Neural Networks and Random Forests

scientific article published on 03 October 2019

LipiDex: An Integrated Software Package for High-Confidence Lipid Identification

scientific article published on 25 April 2018

Mapping Lipid Fragmentation for Tailored Mass Spectral Libraries

scientific article published on 12 February 2019

Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation

scientific article published on 01 September 2020

Mapping of the contraction-induced phosphoproteome identifies TRIM28 as a significant regulator of skeletal muscle size and function

scientific article published on 01 March 2021

Mass spectrometric analysis of body fluids for biomarker discovery

scientific article published on 01 January 2009

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells

scholarly article

Mass spectrometry proteomics reveals a function for mammalian CALCOCO1 in MTOR-regulated selective autophagy

scientific article published on 02 February 2020

Maximal oxidative capacity during exercise is associated with skeletal muscle fuel selection and dynamic changes in mitochondrial protein acetylation

scientific article

Maximizing Tandem Mass Spectrometry Acquisition Rates for Shotgun Proteomics

scientific article published on 03 October 2019

Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain

scientific article

Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data.

scientific article

Metabolic Remodeling during Nitrogen Fixation in Zymomonas mobilis

scientific article published on 16 November 2021

Metabolism of Multiple Aromatic Compounds in Corn Stover Hydrolysate by Rhodopseudomonas palustris

scientific article

Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis

scientific article

Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis

scientific article

Mitochondrial DNA variant in COX1 subunit significantly alters energy metabolism of geographically divergent wild isolates in Caenorhabditis elegans

scientific article

Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function

scientific journal article

Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling.

scientific article published on 26 September 2016

Mitochondrial protein hyperacetylation in the failing heart

scientific article published on 25 February 2016

Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis

scientific article published on 22 February 2021

Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production.

scientific article published in December 2017

Multi-omics Evidence for Inheritance of Energy Pathways in Red Blood Cells

scientific article published on 24 October 2016

Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis

scientific article published on 12 December 2017

Multi-omics analysis identifies essential regulators of mitochondrial stress response in two wild-type <i>C. elegans</i> strains

scientific article published on 05 January 2022

Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis

scientific article published on 07 November 2019

Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice

scientific article published on 11 January 2018

Multiplexed quantification for data-independent acquisition

scientific article

Multipurpose dissociation cell for enhanced ETD of intact protein species.

scientific article published on 23 April 2013

NANOG is multiply phosphorylated and directly modified by ERK2 and CDK1 in vitro

scientific article

Negative Electron Transfer Dissociation Sequencing of Increasingly Sulfated Glycosaminoglycan Oligosaccharides on an Orbitrap Mass Spectrometer.

scientific article published on 6 June 2017

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.

scientific article

NeuCode Labeling in Nematodes: Proteomic and Phosphoproteomic Impact of Ascaroside Treatment in Caenorhabditis elegans

scientific article published on 21 September 2015

NeuCode Proteomics Reveals Bap1 Regulation of Metabolism.

scientific article published on 30 June 2016

NeuCode labels for relative protein quantification.

scientific article published on 17 June 2014

Neucode Labels for Multiplexed, Absolute Protein Quantification

scientific article published on 16 February 2016

Neutron encoded labeling for peptide identification.

scientific article published on 02 May 2013

Neutron-encoded mass signatures for multiplexed proteome quantification

scientific article published on 24 February 2013

Neutron-encoded mass signatures for quantitative top-down proteomics

scientific article published on 19 February 2014

Neutron-encoded protein quantification by peptide carbamylation.

scientific article published on 29 October 2013

Neutron-encoded signatures enable product ion annotation from tandem mass spectra

scientific article

Novosphingobium aromaticivorans uses a Nu-class glutathione-S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin

scientific article published on 15 February 2018

Now, More Than Ever, Proteomics Needs Better Chromatography

scientific article published on October 2016

One-hour proteome analysis in yeast.

scientific article published on 9 April 2015

Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network

scientific article published on 30 September 2016

OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate

scientific article published on 27 December 2018

Optical Fiber-Enabled Photoactivation of Peptides and Proteins

scientific article published on 07 August 2020

Organic acid quantitation by NeuCode methylamidation

scientific article published on 11 April 2014

Orosomucoid Like 3 (ORMDL3) Supports Rhinovirus Replication in Human Epithelial Cells

scientific article published on 20 February 2020

Over 10,000 peptide identifications from the HeLa proteome by using single-shot capillary zone electrophoresis combined with tandem mass spectrometry.

scientific article

PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production

scientific article published on 21 May 2019

Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics ⬇️

scientific article published on August 3, 2012

Parallel detection of intrinsic fluorescence from peptides and proteins for quantification during mass spectrometric analysis

scientific article

Pathway connectivity and signaling coordination in the yeast stress-activated signaling network.

scientific article

Peptide and protein quantification using iTRAQ with electron transfer dissociation

scientific article published on 17 June 2008

Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry

scientific article published on February 2009

Performance characteristics of electron transfer dissociation mass spectrometry

scientific article (publication date: November 2007)

Phosphoproteomics for the masses

scientific article

Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling.

scientific article

Phosphoproteomics with Activated Ion Electron Transfer Dissociation

scientific article published on 6 April 2017

Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development.

scientific article published on 15 November 2017

Phosphorylation and degradation of tomosyn-2 de-represses insulin secretion

scientific article

Phosphorylation at the homotypic interface regulates nucleoprotein oligomerization and assembly of the influenza virus replication machinery

scientific article published on 13 April 2015

Phosphorylation controls RNA binding and transcription by the influenza virus polymerase

scientific article published on 03 September 2020

Phosphorylation regulates human OCT4.

scientific article

Pilot proteomic analysis of cerebrospinal fluid in Alzheimer's disease

scientific article published on 26 April 2021

Plant-derived antifungal agent poacic acid targets β-1,3-glucan

scientific article

Post-Transcriptional Control of Coenzyme Q Biosynthesis Revealed by Transomic Analysis of the RNA-Binding Protein Puf3p

Post-Translation Regulation of Influenza Virus Replication

scientific article published on 26 May 2020

Post-acquisition ETD spectral processing for increased peptide identifications

scientific article published on 14 March 2009

Potential regulatory phosphorylation sites in a Medicago truncatula plasma membrane proton pump implicated during early symbiotic signaling in roots.

scientific article published on 17 July 2015

Pptc7 is an essential phosphatase for promoting mammalian mitochondrial metabolism and biogenesis

scientific article published on 19 July 2019

Production of Over 27 000 Peptide and Nearly 4400 Protein Identifications by Single-Shot Capillary-Zone Electrophoresis-Mass Spectrometry via Combination of a Very-Low-Electroosmosis Coated Capillary, a Third-Generation Electrokinetically-Pumped She

scientific article published on 24 September 2018

Protein Composition of Infectious Spores Reveals Novel Sexual Development and Germination Factors in Cryptococcus

scientific article published on 27 August 2015

Proteome sequencing goes deep.

scientific article

Proteomic Atlas of the Human Brain in Alzheimer's Disease

scientific article published on 20 February 2019

Proteomic and Phosphoproteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3.

scientific article published on 4 May 2018

Proteomic and phosphoproteomic comparison of human ES and iPS cells

scientific article

Proteomics Moves into the Fast Lane

scientific article published on 23 March 2016

Proteomics and pluripotency

scientific article published on 15 October 2011

Proteomics of Eosinophil Activation

scientific article published on 29 September 2017

Proteomics, Lipidomics, Metabolomics, and 16S DNA Sequencing of Dental Plaque From Patients With Diabetes and Periodontal Disease

scientific article published on 29 July 2021

Ptc7p Dephosphorylates Select Mitochondrial Proteins to Enhance Metabolic Function.

scientific article published on January 2017

Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation

scientific article published on 17 July 2013

Quantifying pretreatment degradation compounds in solution and accumulated by cells during solids and yeast recycling in the Rapid Bioconversion with Integrated recycling Technology process using AFEX™ corn stover.

scientific article published on 12 January 2016

Quantifying proteomes and their post-translational modifications by stable isotope label-based mass spectrometry

scientific article published on 05 July 2013

Quantitative capillary zone electrophoresis-mass spectrometry reveals the N-glycome developmental plan during vertebrate embryogenesis

scientific article published on 09 March 2020

Quantitative shotgun proteome analysis by direct infusion

scientific article published on 23 November 2020

Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis

scientific article

Real-time health monitoring through urine metabolomics

scientific article published on 11 November 2019

Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast

article

Ribonucleic Acid Sequence Characterization by Negative Electron Transfer Dissociation Mass Spectrometry

scientific article published on 05 March 2020

S-adenosylmethionine biosynthesis is a targetable metabolic vulnerability of cancer stem cells

scientific article published on 02 February 2019

SIRT3 mediates multi-tissue coupling for metabolic fuel switching

scientific article

Segmentation of Precursor Mass Range Using “Tiling” Approach Increases Peptide Identifications for MS1-Based Label-Free Quantification ⬇️

scientific article published on February 12, 2013

Sequencing Larger Intact Proteins (30-70 kDa) with Activated Ion Electron Transfer Dissociation

scientific article

Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces over 4400 Phosphopeptide Identifications from a 220 ng Sample

scientific article published on 26 June 2019

Statistical analysis of electron transfer dissociation pairwise fragmentation patterns

scientific article published on 28 November 2011

Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer

scientific article

Sulfur Pentafluoride is a Preferred Reagent Cation for Negative Electron Transfer Dissociation.

scientific article published on 27 March 2017

Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors

scientific article published on January 2007

Survival Following Traumatic Brain Injury in Drosophila Is Increased by Heterozygosity for a Mutation of the NF-κB Innate Immune Response Transcription Factor Relish

scientific article published on 27 October 2020

Synthesis and scavenging role of furan fatty acids.

scientific article

Tailoring a Global Iron Regulon to a Uropathogen

scientific article published on 24 March 2020

Tandem phosphorylation of Ser-911 and Thr-912 at the C terminus of yeast plasma membrane H+-ATPase leads to glucose-dependent activation

scientific article published on 11 October 2007

The GIS2 Gene Is Repressed by a Zinc-Regulated Bicistronic RNA in Saccharomyces cerevisiae

article

The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD)

scientific article

The One Hour Human Proteome

scientific article published in 2024

The Peripheral Blood Eosinophil Proteome

scientific article published on 23 March 2016

The Role of Electron Transfer Dissociation in Modern Proteomics

scientific article

The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins

scientific article published on 05 July 2018

The cellular economy of the Saccharomyces cerevisiae zinc proteome

scientific article published on 01 December 2018

The effect of interfering ions on search algorithm performance for electron-transfer dissociation data

scientific article

The genetic basis of aneuploidy tolerance in wild yeast

scientific article published on 07 January 2020

The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperatures

scientific article published on 12 May 2021

The one hour yeast proteome

scientific article published on 19 October 2013

The phosphoproteome response to dithiothreitol reveals unique versus shared features of Saccharomyces cerevisiae stress responses

scientific article published on 29 June 2020

Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation

scientific article published on 10 July 2018

Top-Down Characterization of an Intact Monoclonal Antibody using Activated Ion-Electron Transfer Dissociation

scientific article published on 01 July 2020

UbiB proteins regulate cellular CoQ distribution in Saccharomyces cerevisiae

scientific article published on 06 August 2021

Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses

scientific article published on 14 September 2018

Unraveling the histone's potential: a proteomics perspective

scientific article published on 17 September 2008

Valence parity renders z(*)-type ions chemically distinct

scientific article published on 29 April 2008

Valosin-containing protein (VCP)-Adaptor Interactions are Exceptionally Dynamic and Subject to Differential Modulation by a VCP Inhibitor

scientific article published on 12 July 2016

Value of using multiple proteases for large-scale mass spectrometry-based proteomics

scientific article

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