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List of works by Xiaohui Fan

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

scientific article
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

scientific article
Strategies and Techniques for Multi-Component Drug Design from Medicinal Herbs and Traditional Chinese Medicine

scientific article published on January 1, 2012
A network pharmacology study of Chinese medicine QiShenYiQi to reveal its underlying multi-compound, multi-target, multi-pathway mode of action

scientific article (publication date: 2014)
Identifying roles of “Jun-Chen-Zuo-Shi” component herbs of QiShenYiQi formula in treating acute myocardial ischemia by network pharmacology

scientific article published on September 16, 2014
Integrated analysis of transcriptomics and metabonomics profiles in aflatoxin B1-induced hepatotoxicity in rat

scientific article published on February 4, 2013
Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists

scientific article published on 6 September 2006
Drug–Disease Association and Drug-Repositioning Predictions in Complex Diseases Using Causal Inference–Probabilistic Matrix Factorization

scientific article published on August 22, 2014
Chemometric Analysis for Identification of Botanical Raw Materials for Pharmaceutical Use: A Case Study Using Panax notoginseng

scientific article published on January 31, 2014
Efficacy-oriented compatibility for component-based Chinese medicine

scientific article published on April 13, 2015
A Network Study of Chinese Medicine Xuesaitong Injection to Elucidate a Complex Mode of Action with Multicompound, Multitarget, and Multipathway

scientific article published on August 24, 2013
Development of fluorescence imaging-based assay for screening cardioprotective compounds from medicinal plants

scientific article published on June 23, 2011
Dissecting active ingredients of Chinese medicine by content-weighted ingredient-target network.

scientific article published on 30 April 2014
Metabolite Profiling and Pharmacokinetics of Herbal Compounds Following Oral Administration of a Cardiovascular Multi-herb Medicine (Qishen Yiqi Pills) in Rats

scientific article published on 01 June 2012
Why QSAR Fails: An Empirical Evaluation Using Conventional Computational Approach

scientific article published on March 16, 2011
A pathway and network review on beta-adrenoceptor signaling and beta blockers in cardiac remodeling

scientific article
Integrated expression profiles of mRNA and microRNA in the liver of Fructus Meliae Toosendan water extract injured mice

scientific article published on 19 October 2015
Systematic characterisation of secondary metabolites from Ixeris sonchifolia by the combined use of HPLC‐TOFMS and HPLC‐ITMS

scientific article published on August 26, 2010
In silico methods for predicting drug–drug interactions with cytochrome P-450s, transporters and beyond

scientific article published on March 19, 2015
Derivative multiple reaction monitoring and single herb calibration approach for multiple components quantification of traditional Chinese medicine analogous formulae

scientific article published on 12 December 2014
Cross-Platform Comparison of Microarray-Based Multiple-Class Prediction

scientific article (publication date: 11 January 2011)
A proteomic study of Shengmai injection's mechanism on preventing cardiac ischemia-reperfusion injury via energy metabolism modulation

scientific article published on November 27, 2014
Exploring the interaction between Salvia miltiorrhiza and human serum albumin: Insights from herb–drug interaction reports, computational analysis and experimental studies

scientific article published on February 23, 2016
Cardioprotective Effects of Glycyrrhiza uralensis Extract Against Doxorubicin- Induced Toxicity

scientific article published on March 4, 2011
Reliably assessing prediction reliability for high dimensional QSAR data

scientific article published on December 19, 2012
iTRAQ-based proteomic analysis reveals recovery of impaired mitochondrial function in ischemic myocardium by Shenmai formula

scientific article published on 4 January 2018
A Bioactive Chemical Markers Based Strategy for Quality Assessment of Botanical Drugs: Xuesaitong Injection as a Case Study.

scientific article
Astragali Radix protects myocardium from ischemia injury by modulating energy metabolism

scientific article published on 02 August 2014
Copy number variation is highly correlated with differential gene expression: a pan-cancer study

scientific article published on 09 November 2019
Circulating exosomal microRNAs reveal the mechanism of Fructus Meliae Toosendan-induced liver injury in mice.

scientific article published on 12 February 2018
Virtual separation of phytochemical constituents by their adduct-ion patterns in full mass spectra

scientific article published on January 11, 2012
Investigating chemical features of Panax notoginseng based on integrating HPLC fingerprinting and determination of multiconstituents by single reference standard.

scientific article
Network pharmacology study reveals energy metabolism and apoptosis pathways-mediated cardioprotective effects of Shenqi Fuzheng

scientific article published on 23 August 2018
Transcriptomics: a Sword to Cut the Gordian knot of Traditional Chinese Medicine

scientific article published on October 26, 2015
Qualitative analysis of chemical constituents in traditional Chinese medicine analogous formula cheng-Qi decoctions by liquid chromatography-mass spectrometry

scientific article published on 30 June 2015
Prediction of Adverse Drug Reactions by Combining Biomedical Tripartite Network and Graph Representation Model

scientific article published on 13 December 2019
Revealing topics and their evolution in biomedical literature using Bio-DTM: a case study of ginseng

scientific article published on 12 September 2017
scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

scientific article published on 04 February 2020
New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data

scientific article published on 21 May 2020
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

scientific article published on 16 April 2021
Protective effects of Ginkgo Biloba Dropping Pills against liver ischemia/reperfusion injury in mice

scientific article published on 19 November 2020
Network-based Assessment on Chemical-induced Cholestatic Liver Injury

scientific article published on 30 May 2016
Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

scientific article published on 03 January 2022
A 13 Billion Year View of Galaxy Growth: Metallicity Gradient Evolution from the Local Universe to z = 9 with JWST and Archival Surveys

Application of the adverse outcome pathway concept for investigating developmental neurotoxicity potential of Chinese herbal medicines by using human neural progenitor cells in vitro

scientific article published in 2022
De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution

MetaGeneBank: a standardized database to study deep sequenced metagenomic data from human fecal specimen

scientific article published on 30 September 2021

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