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List of works by Bernd Thiede

A differential protein solubility approach for the depletion of highly abundant proteins in plasma using ammonium sulfate

scientific article published on 6 November 2015

A global approach combining proteome analysis and phenotypic screening with RNA interference yields novel apoptosis regulators

scientific article published on 26 November 2004

A rapid approach for isobaric peptide termini labeling

scientific article

AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint.

scientific article published on 5 April 2017

Absolute two-point quantification of proteins using dimethylated proteotypic peptides

scientific article published on 16 August 2018

Active transcriptomic and proteomic reprogramming in the C. elegans nucleotide excision repair mutant xpa-1.

scientific article

An approach for triplex-isobaric peptide termini labeling (triplex-IPTL).

scientific article published on 29 January 2013

Analysis of T4SS-induced signaling by H. pylori using quantitative phosphoproteomics

scientific article published on 18 July 2014

Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry.

scientific article published in April 2010

ApoptoProteomics, an integrated database for analysis of proteomics data obtained from apoptotic cells

scientific article

Application of the half decimal place rule to increase the peptide identification rate

scientific article published on 2 November 2016

Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex

scientific article published on 23 October 2019

Assembling proteomics data as a prerequisite for the analysis of large scale experiments

scientific article

Author Correction: Large-scale intact glycopeptide identification by Mascot database search.

scientific article published on 22 June 2018

C1orf163/RESA1 is a novel mitochondrial intermembrane space protein connected to respiratory chain assembly

scientific article

CD147 (Basigin/Emmprin) identifies FoxP3+CD45RO+CTLA4+-activated human regulatory T cells

Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics

scientific article published on 04 September 2020

Cathodic Polarization Coats Titanium Based Implant Materials with Enamel Matrix Derivate (EMD).

scientific article published on 14 March 2014

Cell death proteomics database: consolidating proteomics data on cell death

scientific article

Cloning and biochemical characterization of APIT, a new l-amino acid oxidase from Aplysia punctata

scientific article

Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL).

scientific article

Comprehensive quantitative proteome analysis of 20S proteasome subtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches

scientific article published in August 2006

Consolidation of proteomics data in the Cancer Proteomics database

scientific article

Correction: Ezrin-anchored PKA phosphorylates serine 369 and 373 on connexin 43 to enhance gap junction assembly, communication, and cell fusion

scientific article published on 02 July 2019

Correlation of probiotic Lactobacillus salivarius growth phase with its cell wall-associated proteome

scientific article

Data for the co-expression and purification of human recombinant CaMKK2 in complex with calmodulin in Escherichia coli

scientific article

Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species

scientific article

Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes

scientific article published on 09 October 2013

Design and characterization of a new pVII combinatorial phage display peptide library for protease substrate mining and using Factor VII activating protease (FSAP) as a model

scientific article published on 16 March 2020

Distinctive mass losses of tryptic peptides generated by matrix-assisted laser desorption/ionization time-of-flight/time-of-flight

scientific article published in January 2006

Expansion of multipotent stem cells from the adult human brain

scientific article (publication date: 2013)

Extracellular identification of a processed type II ComR/ComS pheromone of Streptococcus mutans

scientific article published on 18 May 2012

Ezrin-anchored PKA phosphorylates serine 369 and 373 on connexin 43 to enhance gap junction assembly, communication, and cell fusion

scientific article published on 19 December 2017

Factor VII deficiency: Unveiling the cellular and molecular mechanisms underlying three model alterations of the enzyme catalytic domain

scientific article

High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture (SILAC), two-dimensional gel electrophoresis (2DE) and nano-liquid chromatography coupled to an LTQ-Orbitrap mass sp

scientific article published in October 2012

High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture(SILAC), two-dimensional gel electrophoresis(2DE) and nano-liquid chromatograpohy coupled to an LTQ-OrbitrapMass spec

scientific article published on October 2012

Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells

scientific article

Identification of Alternative Splice Variants Using Unique Tryptic Peptide Sequences for Database Searches

scientific article

Identification of Lactobacilli from deep carious lesions by means of species-specific PCR and MALDI-TOF mass spectrometry

scientific article published in January 2013

Identification of interaction partners of the cytosolic polyproline region of CD95 ligand (CD178)

scientific article (publication date: 22 May 2002)

Identification of kinases phosphorylating 13 sites in the nuclear, DNA-binding protein NUCKS.

scientific article published on 20 December 2016

Identification of potential saliva and tear biomarkers in primary Sjögren's syndrome, utilising the extraction of extracellular vesicles and proteomics analysis.

scientific article

Identification of prostate cancer biomarkers in urinary exosomes

scientific article

Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein Encoded by Segment 8 ORF2 and Its Interaction with ISAV and Intracellular Proteins

scientific article published on 18 February 2016

IsobariQ: software for isobaric quantitative proteomics using IPTL, iTRAQ, and TMT.

scientific article

Isobaric peptide termini labeling for MS/MS-based quantitative proteomics

scientific article published in September 2009

Isobaric peptide termini labeling utilizing site-specific N-terminal succinylation

scientific article published on 16 May 2011

Isobaric protein and peptide quantification: perspectives and issues

scientific article published on October 2010

Large-scale intact glycopeptide identification by Mascot database search

scientific article published in February 2018

MPSA short communications

article by Eugene M. Barnes et al published July 1994 in The Protein Journal

Metabolic reprogramming of metastatic breast cancer and melanoma by let-7a microRNA

scientific article

MiR-133b targets antiapoptotic genes and enhances death receptor-induced apoptosis

scientific article

Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia

scientific article

NIPSNAP1 and NIPSNAP2 Act as "Eat Me" Signals for Mitophagy

scientific article published on 11 April 2019

Peptide mass fingerprinting

scientific article published on 12 January 2005

Phosphorylation Modulates Ameloblastin Self-assembly and Ca 2+ Binding

scientific article published on 27 July 2017

Polyreactivity of Monoclonal Antibodies Made Against Human Erythrocyte Membranes with Various Pathogenic Bacteria ⬇️

scientific article published on February 1, 2011

Prediction of translocation and cleavage of heterogeneous ribonuclear proteins and Rho guanine nucleotide dissociation inhibitor 2 during apoptosis by subcellular proteome analysis

scientific article (publication date: August 2002)

Predominant Identification of RNA-Binding Proteins in Fas-Induced Apoptosis by Proteome Analysis

scientific article published on 05 December 2001

Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate

scientific article published on 30 October 2019

Protease activated receptors (PAR)-1 and -2 mediate cellular effects of factor VII activating protease (FSAP)

scientific article published on 28 November 2019

Protein-coated nanostructured surfaces affect the adhesion of <i>Escherichia coli</i>

scientific article published in 2022

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database

scientific article

Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas

scientific article published on 28 April 2020

Proteome analysis of apoptotic cells

scientific article published in September 2004

Proteome analysis of tunicamycin‐induced ER stress ⬇️

scientific article published on July 1, 2012

Proteomic analysis of a multi-resistant clinical Escherichia coli isolate of unknown genomic background

scientific article

Proteomic and histopathological characterisation of sicca subjects and primary Sjögren's syndrome patients reveals promising tear, saliva and extracellular vesicle disease biomarkers

scientific article published on 31 July 2019

Quantitative Proteome Analysis Using Isobaric Peptide Termini Labeling (IPTL)

scientific article published in 2011

Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells

scientific article published on 2 May 2017

Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis

scientific article published on 7 August 2013

Quantitative proteome analysis of CD95 (Fas/Apo-1)-induced apoptosis by stable isotope labeling with amino acids in cell culture, 2-DE and MALDI-MS.

scientific article published in January 2006

Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS.

scientific article

Quantitative proteome analysis of detergent-resistant membranes identifies the differential regulation of protein kinase C isoforms in apoptotic T cells

Quantitative proteome analysis of detergent-resistant membranes identifies the differential regulation of protein kinase C isoforms in apoptotic T cells

scientific article published on 01 August 2010

Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells.

scientific article

Quantitative proteome analysis reveals RNA processing factors as modulators of ionizing radiation-induced apoptosis in the C. elegans germline

scientific article published on 23 July 2012

RAF kinases are stabilized and required for dendritic cell differentiation and function

scientific article published on 20 September 2019

Rapid determination of amino acid incorporation by stable isotope labeling with amino acids in cell culture (SILAC).

scientific article

Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones

scientific article

Sericin-Induced Melanogenesis in Cultured Retinal Pigment Epithelial Cells Is Associated with Elevated Levels of Hydrogen Peroxide and Inflammatory Proteins

scientific article published on 24 September 2020

Severity of clinical dry eye manifestations influences protein expression in tear fluid of patients with primary Sjögren's syndrome

scientific article published in PLoS ONE

Shotgun mass mapping of Lactobacillus species and subspecies from caries related isolates by MALDI-MS.

scientific article

Shotgun proteome analysis of protein cleavage in apoptotic cells

scientific article published in May 2005

Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells

scientific article published on 13 March 2020

Sorafenib-induced mitochondrial complex I inactivation and cell death in human neuroblastoma cells

scientific article published on 15 February 2012

Subfractions of enamel matrix derivative differentially influence cytokine secretion from human oral fibroblasts ⬇️

scientific article published on 19 March 2015

Temporal proteome profiling of taxol-induced mitotic arrest and apoptosis

scientific article published in June 2010

The impact of carbon-13 and deuterium on relative quantification of proteins using stable isotope diethyl labeling

scientific article published on May 2015

The preferred substrates for transglutaminase 2 in a complex wheat gluten digest are Peptide fragments harboring celiac disease T-cell epitopes

scientific article

The proteome of the human parotid gland secretion in elderly with and without root caries

scientific article published in January 2009

Ultracentrifugation versus kit exosome isolation: nanoLC-MS and other tools reveal similar performance biomarkers, but also contaminations

Using a label-free proteomics method to identify differentially abundant proteins in closely related hypo- and hypervirulent clinical Mycobacterium tuberculosis Beijing isolates

scientific article

Using the fluorescent properties of STO-609 as a tool to assist structure-function analyses of recombinant CaMKK2.

scientific article

Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation data set and peptide identification by tandem mass spectrometry

scientific article published in June 2009

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