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List of works by Stefan A Rensing

A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants

scientific article published on 17 March 2020

A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants

scientific article published on 06 October 2020

A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens.

scientific article published on March 2017

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

scientific article published on 23 July 2008

ABA-Induced Vegetative Diaspore Formation in

scientific article published in 2019

Aethionema arabicum: a novel model plant to study the light control of seed germination

scientific article published on 01 June 2019

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

scientific article

An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

scientific article (publication date: 2 August 2007)

Analysis of the Localization of Fluorescent PpROP1 and PpROP-GEF4 Fusion Proteins in Moss Protonemata Based on Genomic "Knock-In" and Estradiol-Titratable Expression

scientific article published on 12 April 2019

Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

scientific article published on 13 March 2020

Are fungi-derived genomic regions related to antagonism toward fungi in mosses?

scientific article published on 24 June 2020

Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica

scientific article published on 11 May 2011

Characterization of Phytochrome Interacting Factors from the Moss Physcomitrella patens Illustrates Conservation of Phytochrome Signaling Modules in Land Plants.

scientific article

Characterization of evolutionarily conserved key players affecting eukaryotic flagellar motility and fertility using a moss model

scientific article published on 17 February 2020

Characterization of spa mutants in the moss Physcomitrella provides evidence for functional divergence of SPA genes during the evolution of land plants

scientific article published on 20 July 2019

Combination of the Endogenous lhcsr1 Promoter and Codon Usage Optimization Boosts Protein Expression in the Moss Physcomitrella patens

scientific article published on 31 October 2017

Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae ⬇️

scientific article published on 5 December 2017

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

scientific article

DEK1 displays a strong subcellular polarity during Physcomitrella patens 3D growth

scientific article published on 08 January 2020

Dating the early evolution of plants: detection and molecular clock analyses of orthologs.

scientific article published on 26 June 2007

De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome

scientific article

Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing

scientific article published on 05 September 2018

Developmental Control and Plasticity of Fruit and Seed Dimorphism in Aethionema arabicum

scientific article published on 4 October 2016

Diversification of ftsZ during early land plant evolution

scientific article published in February 2004

Dual targeting of plastid division protein FtsZ to chloroplasts and the cytoplasm

scientific article published in September 2004

EST Sequencing from Embryogenic Cyclamen persicum Cell Cultures Identifies a High Proportion of Transcripts Homologous to Plant Genes Involved in Somatic Embryogenesis

Ecological plant epigenetics: Evidence from model and non-model species, and the way forward

scientific article published on 12 October 2017

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

scientific article published on 12 November 2021

Erratum to: An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

scientific article published on 8 September 2016

Evolution of the Symbiosis-Specific GRAS Regulatory Network in Bryophytes

article published in 2018

Exploring plant biodiversity: the Physcomitrella genome and beyond.

scientific article

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article

Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation.

scientific article

Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

scientific article

Gene gains paved the path to land

scientific article published on 01 January 2020

Generation-biased gene expression in a bryophyte model system

scientific article

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance. ⬇️

scientific article

Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family

scientific article published on 05 November 2019

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

scientific article

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

scientific article

Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity

scientific article (publication date: 19 July 2010)

Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri

scientific article

Green targeting predictor and ambiguous targeting predictor 2: the pitfalls of plant protein targeting prediction and of transient protein expression in heterologous systems

scientific article published on 5 August 2013

HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants

scientific article published on 11 April 2021

High frequency of phenotypic deviations in Physcomitrella patens plants transformed with a gene-disruption library

scientific article published on 18 July 2002

Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens

scientific article

Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites

scientific article published on 30 May 2006

Insights into the Evolution of Multicellularity from the Sea Lettuce Genome

scientific article published on 13 September 2018

Iron-Sulfur Cluster Biosynthesis in Algae with Complex Plastids

article published in 2018

Large impact of the apoplast on somatic embryogenesis in Cyclamen persicum offers possibilities for improved developmental control in vitro

scientific article

Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions

2014 scientific article

Localization and Evolution of Putative Triose Phosphate Translocators in the Diatom Phaeodactylum tricornutum

scientific article published on 9 October 2015

Massive Protein Import into the Early-Evolutionary-Stage Photosynthetic Organelle of the Amoeba Paulinella chromatophora.

scientific article published on 6 September 2017

Means to optimize protein expression in transgenic plants

scientific article

Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling

scientific article published on 26 September 2009

Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex

scientific article

Moss transcriptome and beyond

scientific article published in December 2002

Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga

scientific article published on 27 July 2020

Network theory inspired analysis of time-resolved expression data reveals key players guiding P. patens stem cell development

scientific article

Ontologies as integrative tools for plant science

scientific article

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

scientific article published on 12 November 2019

Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.

scientific article

Physcomitrella patens Reute mCherry as a tool for efficient crossing within and between ecotypes

scientific article published on 30 May 2018

PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins

article

PlnTFDB: updated content and new features of the plant transcription factor database

scientific article published on 25 October 2009

Prediction and Validation of Promoters Involved in the Abscisic Acid Response in Physcomitrella patens ⬇️

scientific article published on March 11, 2011

Prediction of dual protein targeting to plant organelles.

scientific article

Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens

scientific article

RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal

scientific article

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

scientific article (publication date: 23 July 2013)

Reconstructing trait evolution in plant evo-devo studies

scientific article published on 01 November 2019

Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution

scientific article

Rocket Science: The Effect of Spaceflight on Germination Physiology, Ageing, and Transcriptome of Eruca sativa Seeds

scientific article published on 24 April 2020

Selfing in haploid plants and efficacy of selection: codon usage bias in the model moss Physcomitrella patens

scientific article

Sexual reproduction, sporophyte development and molecular variation in the model moss Physcomitrella patens: introducing the ecotype Reute.

scientific article

Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing

scientific article published on 07 July 2020

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

article

The DEK1 Calpain Linker Functions in Three-Dimensional Body Patterning in Physcomitrella patens.

scientific article published on 9 August 2016

The Ectocarpus Genome and Brown Algal Genomics

article published in 2012

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

scientific article

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

scientific article

The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.

scientific article published on 22 April 2018

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

scientific article

The biotrophic development of Ustilago maydis studied by RNAseq analysis

scientific article published on 25 January 2018

The chromatin landscape of the moss Physcomitrella patens and its dynamics during development and drought stress.

scientific article published on 13 June 2014

The evolution of eukaryotic cells from the perspective of peroxisomes: phylogenetic analyses of peroxisomal beta-oxidation enzymes support mitochondria-first models of eukaryotic cell evolution

scientific article

The evolution of nuclear auxin signalling

scientific article

The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration

scientific article published on 7 November 2006

The molecular and physiological responses of Physcomitrella patens to ultraviolet-B radiation

scientific article (publication date: July 2010)

The plant ontology as a tool for comparative plant anatomy and genomic analyses

scientific article published on 5 December 2012

The speciation history of the Physcomitrium--Physcomitrella species complex.

scientific article

Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

scientific article published on 30 January 2019

WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens.

scientific article

ppdb: plant promoter database version 3.0.

scientific article published on 4 November 2013

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