List of works by Ruiting Lan

A novel Escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China

scientific article

A novel plasmid-encoded serotype conversion mechanism through addition of phosphoethanolamine to the O-antigen of Shigella flexneri

scientific article

A recalibrated molecular clock and independent origins for the cholera pandemic clones

scientific article (publication date: 2008)

AFLP analysis of Salmonella enterica serovar Typhimurium isolates of phage types DT 9 and DT 135: diversity within phage types and its epidemiological significance

scientific article published in August 2003

Adaptation of multilocus sequencing for studying variation within a major clone: evolutionary relationships of Salmonella enterica serovar Typhimurium

scientific article

Amplified fragment length polymorphism analysis of Salmonella enterica

scientific article published in January 2007

An O island 172 encoded RNA helicase regulates the motility of Escherichia coli O157:H7.

scientific article

Antimicrobial Resistance and Cytotoxicity of Citrobacter spp. in Maanshan Anhui Province, China

scientific article

Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis

scientific article

Bug breakfast in the Bulletin. Pertussis in NSW and its prevention in infants and children

scientific article published on 01 December 2011

Characterization of Listeria monocytogenes isolated from human Listeriosis cases in China

scientific article published on 19 August 2015

Characterization of Shiga toxin-producing Escherichia coli isolated from healthy pigs in China

scientific article

Characterization of a large novel phage-like plasmid in Salmonella enterica serovar Typhimurium

scientific article

Comparative genomic hybridization identifies virulence differences in Streptococcus suis

scientific article

Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence

scientific article

Computational bacterial genome-wide analysis of phylogenetic profiles reveals potential virulence genes of Streptococcus agalactiae

scientific article

Conditions for the evolution of gene clusters in bacterial genomes

scientific article

Corrigendum: Actinomyces vulturis sp. nov., isolated from Gyps himalayensis

scientific article

Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing.

scientific article published on 27 May 2015

Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak

scientific article

Delineation of genetic relatedness and population structure of oral and enteric Campylobacter concisus strains by analysis of housekeeping genes.

scientific article

Derivation of Escherichia coli O157:H7 from its O55:H7 precursor

scientific article

Detection and dissemination of the colistin resistance gene, mcr-1, from isolates and faecal samples in China

scientific article published on 5 January 2017

Development of a multiplex PCR assay targeting O-antigen modification genes for molecular serotyping of Shigella flexneri

scientific article published on 31 August 2011

Development of multiplex PCR assays for the identification of the 33 serotypes of Streptococcus suis

scientific article

Dissemination and serotype modification potential of pSFxv_2, an O-antigen PEtN modification plasmid in Shigella flexneri

scientific article published on 29 December 2013

Eight Novel Capsular Polysaccharide Synthesis Gene Loci Identified in Nontypeable Streptococcus suis Isolates

scientific article published on 10 April 2015

Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri

scientific article

Emergence of a novel Shigella flexneri serotype 1d in China

article

Erratum for Carbonetti et al., "Highlights of the 11th International Bordetella Symposium: from Basic Biology to Vaccine Development".

scientific article

Erratum: Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity

scientific article published on 16 February 2017

Escherichia coli in disguise: molecular origins of Shigella

scientific article (publication date: September 2002)

Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana

scientific article

Evolution of seventh cholera pandemic and origin of 1991 epidemic, Latin America

scientific article

Evolutionary changes of the flhDC flagellar master operon in Shigella strains

scientific article

Examination of the Anaerobic Growth of Campylobacter concisus Strains.

scientific article

Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar typhimurium reveals phage-type- specific markers and potential for microarray typing

scientific article

Frequent recombination and low level of clonality within Salmonella enterica subspecies I.

scientific article

Genesis of a novel Shigella flexneri serotype by sequential infection of serotype-converting bacteriophages SfX and SfI.

scientific article

Genetic Diversity, Multidrug Resistance, and Virulence of From Diarrheal Patients and Healthy Individuals

scientific article published in 2018

Genetic and structural identification of an O-acyltransferase gene (oacC) responsible for the 3/4-O-acetylation on rhamnose III in Shigella flexneri serotype 6.

scientific article

Genetic diversity and molecular typing of Listeria monocytogenes in China

scientific article

Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica Serovar Typhimurium

scientific article published on 11 January 2012

Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing

scientific article published on 26 August 2008

Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage.

scientific article

Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic.

scientific article published on 27 January 2016

Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types

scientific article

Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China

article

Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection

scientific article published on 6 March 2017

Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant Shigella flexneri clone in China

scientific article published on 22 January 2014

Global population structure and evolution of Bordetella pertussis and their relationship with vaccination

scientific article published on 22 April 2014

Global transcriptional and phenotypic analyses of Escherichia coli O157:H7 strain Xuzhou21 and its pO157_Sal cured mutant

scientific article

Highlights of the 11th International Bordetella Symposium: from Basic Biology to Vaccine Development

scientific article

Identification and characterization of a novel Shigella flexneri serotype Yv in China

scientific article

Identification of a divergent O-acetyltransferase gene oac 1b from Shigella flexneri serotype 1b strains

scientific article published on 5 September 2012

Identification of an O-acyltransferase gene (oacB) that mediates 3- and 4-O-acetylation of rhamnose III in Shigella flexneri O antigens

scientific article published on 07 February 2014

Identification of genes and genomic islands correlated with high pathogenicity in Streptococcus suis using whole genome tiling microarrays

scientific article

Importation of the major pilin TcpA gene and frequent recombination drive the divergence of the Vibrio pathogenicity island in Vibrio cholerae.

scientific article

In silico Identification of Serovar-Specific Genes for Salmonella Serotyping

article

In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.

scientific article

Infection by and dissemination of NDM-5-producing Escherichia coli in China

scientific article published on 4 November 2015

Insight into Evolution of Bordetella pertussis from Comparative Genomic Analysis: Evidence of Vaccine-Driven Selection

scientific article published on 10 September 2010

Insights into the evolution of pathogenicity of Escherichia coli from genomic analysis of intestinal E. coli of Marmota himalayana in Qinghai-Tibet plateau of China

scientific article

Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB).

scientific article

Investigation of the enteric pathogenic potential of oral Campylobacter concisus strains isolated from patients with inflammatory bowel disease

scientific article

Isolation and characterization of Listeria species from rodents in natural environments in China

scientific article published on 07 June 2017

Isolation and characterization of cytotoxic, aggregative Citrobacter freundii

scientific article

Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri

scientific article

Minimum core genome sequence typing of bacterial pathogens: a unified approach for clinical and public health microbiology

scientific article published on 29 May 2013

Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China

scientific article

Molecular basis of the indole-negative reaction in Shigella strains: extensive damages to the tna operon by insertion sequences

scientific article

Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp

scientific article

Molecular markers with potential to replace phage typing for Salmonella enterica serovar typhimurium

scientific article published on 28 August 2006

Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae

scientific article

Multiple Endonuclease Restriction Real-Time Loop-Mediated Isothermal Amplification: A Novel Analytically Rapid, Sensitive, Multiplex Loop-Mediated Isothermal Amplification Detection Technique

scientific article published on July 2015

Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi

scientific article published on 17 June 2009

Newly emerging clones of Bordetella pertussis carrying prn2 and ptxP3 alleles implicated in Australian pertussis epidemic in 2008-2010.

scientific article published on 13 March 2012

Novel Capsular Polysaccharide Loci and New Diagnostic Tools for High-Throughput Capsular Gene Typing in Streptococcus suis

scientific article published on 30 September 2016

Novel Salmonella enterica Serovar Typhimurium Genotype Levels as Herald of Seasonal Salmonellosis Epidemics.

scientific article

O-antigen structure of Shigella flexneri serotype Yv and effect of the lpt-O gene variation on phosphoethanolamine modification of S. flexneri O-antigens.

scientific article

Pandemic spread of cholera: genetic diversity and relationships within the seventh pandemic clone of Vibrio cholerae determined by amplified fragment length polymorphism

scientific article

Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model.

scientific article published on 30 September 2015

Population analysis of Streptococcus suis isolates from slaughtered swine by use of minimum core genome sequence typing

scientific article

Population and evolutionary dynamics of Shiga-toxin producing Escherichia coli O157 in a beef herd: A longitudinal study

scientific article published on 27 January 2017

Population structure and evolution of non-O1/non-O139 Vibrio cholerae by multilocus sequence typing

scientific article

Population structure and evolution of pathogenicity of Yersinia pseudotuberculosis

scientific article

Population structure and minimum core genome typing of Legionella pneumophila

scientific article published on 18 February 2016

Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka

scientific article published on 11 December 2013

Population structure of Helicobacter pylori among ethnic groups in Malaysia: recent acquisition of the bacterium by the Malay population

scientific article published on 19 June 2009

Population structure, origins and evolution of major Salmonella enterica clones

scientific article published on 23 April 2009

Prevalence and Molecular Characteristics of Extended-Spectrum β-Lactamase Genes in Escherichia coli Isolated from Diarrheic Patients in China

scientific article published on 13 February 2017

Prevalence of Salmonella Isolates from Chicken and Pig Slaughterhouses and Emergence of Ciprofloxacin and Cefotaxime Co-Resistant S. enterica Serovar Indiana in Henan, China

scientific article published on 9 December 2015

Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and High Resolution Melt analysis.

scientific article

Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia.

scientific article published on April 2014

Rates of mutation and host transmission for an Escherichia coli clone over 3 years

scientific article

Risk Factors and Level of Listeria monocytogenes Contamination of Raw Pork in Retail Markets in China.

scientific article published on 29 May 2018

SNP genotyping of enterohemorrhagic Escherichia coli O157:H7 isolates from China and genomic identity of the 1999 Xuzhou outbreak

scientific article published on 14 March 2013

Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis.

scientific article published on 24 January 2012

Sequential isolation in a patient of Raoultella planticola and Escherichia coli bearing a novel ISCR1 element carrying blaNDM-1

scientific article

Serological identification and prevalence of a novel O-antigen epitope linked to 3- and 4-O-acetylated rhamnose III of lipopolysaccharide in Shigella flexneri

scientific article

Serotype-converting bacteriophage SfII encodes an acyltransferase protein that mediates 6-O-acetylation of GlcNAc in Shigella flexneri O-antigens, conferring on the host a novel O-antigen epitope

scientific article

Sex and virulence in Escherichia coli: an evolutionary perspective

scientific article (publication date: June 2006)

Shiga Toxin-Producing Escherichia coli O157 Shedding Dynamics in an Australian Beef Herd

scientific article published on 27 November 2017

Shiga toxin-producing Escherichia coli in yaks (Bos grunniens) from the Qinghai-Tibetan Plateau, China

scientific article

Single nucleotide polymorphism typing of global Salmonella enterica serovar Typhi isolates by use of a hairpin primer real-time PCR assay

scientific article

Single-nucleotide-polymorphism typing and genetic relationships of Salmonella enterica serovar Typhi isolates

scientific article

SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes

scientific article

Streptococcus halotolerans sp. nov. isolated from the respiratory tract of Marmota himalayana in Qinghai-Tibet Plateau of China

scientific article

Streptococcus himalayensis sp. nov., isolated from the respiratory tract of Marmota himalayana

scientific article

Streptococcus marmotae sp. nov., isolated from the respiratory tract of Marmota himalayana

scientific article

Structure of the O-antigen of a novel Shigella flexneri serotype, 1d (I: 7,8).

scientific article

The Type VI Secretion System Modulates Flagellar Gene Expression and Secretion in Citrobacter freundii and Contributes to Adhesion and Cytotoxicity to Host Cells

scientific article published on 13 April 2015

The distribution of insertion sequences in the genome of Shigella flexneri strain 2457T.

scientific article published in December 2007

The prevalence and polymorphisms of zonula occluden toxin gene in multiple Campylobacter concisus strains isolated from saliva of patients with inflammatory bowel disease and controls

scientific article

US Gulf-like toxigenic O1 Vibrio cholerae causing sporadic cholera outbreaks in China.

scientific article

Vibrio cholerae pathogenic clones.

scientific article

Virulence variations in Shigella and enteroinvasive Escherichia coli using the Caenorhabditis elegans model

scientific article

Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014.

scientific article

Whole-genome sequencing and comparative genomic analysis of Bordetella pertussis isolates from the 2007-2008 epidemic in Israel.

scientific article published on 30 November 2016

Zonula occludens toxins and their prophages in Campylobacter species

scientific article

pO157_Sal, a novel conjugative plasmid detected in outbreak isolates of Escherichia coli O157:H7.

scientific article

Paulina is supported by:

About Paulina

Help