List of works by Kunio Miki

A Novel Aromatic Hydrocarbon with 16π-Electron Periphery:“Cyclic Bicalicene”

scholarly article by Shigeo Yonedo et al published January 1984 in Angewandte Chemie International Edition

A P39R mutation at the N-terminal domain of human αB-crystallin regulates its oligomeric state and chaperone-like activity

scientific article published in August 2012

A detailed biochemical characterization of phosphopantothenate synthetase, a novel enzyme involved in coenzyme A biosynthesis in the Archaea

scientific article published on 2 September 2012

A practical phasing procedure using the MAD method without the aid of XAFS measurements: successful solution in the structure determination of the outer-membrane lipoprotein carrier LolA.

scientific article published on 23 July 2003

ATP binding is critical for the conformational change from an open to closed state in archaeal group II chaperonin.

scientific article published on 14 August 2003

An engineered chaperonin caging a guest protein: Structural insights and potential as a protein expression tool

scientific article published in February 2005

An uncharacterized member of the ribokinase family in Thermococcus kodakarensis exhibits myo-inositol kinase activity

scientific article published on 4 June 2013

Atomic Resolution Structure of the Orotidine 5'-Monophosphate Decarboxylase Product Complex Combined with Surface Plasmon Resonance Analysis: IMPLICATIONS FOR THE CATALYTIC MECHANISM

scientific article

Bacillus circulans MH-K1 chitosanase: amino acid residues responsible for substrate binding

scientific article published in November 2005

Characterization and in vitro interaction study of a [NiFe] hydrogenase large subunit from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1

scientific article published on 25 November 2011

Characterization of Class IB Terpene Synthase: The First Crystal Structure Bound with a Substrate Surrogate

scientific article published on 13 April 2020

Characterization of new D-beta-aspartate-containing proteins in a lens-derived cell line

scientific article

Characterization of perdeuterated high-potential iron-sulfur protein with high-resolution X-ray crystallography

scientific article published on 10 August 2019

Characterization of the Nqo5 subunit of bacterial complex I in the isolated state.

scientific article published on 8 June 2016

Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 Å.

scientific article

Co-translational folding of α-helical proteins: structural studies of intermediate-length variants of the λ repressor

scientific article published on 27 June 2018

Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state

scientific article published on 30 September 2021

Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation

scientific article

Crystal Structure of Calcium-free α-Amylase from Bacillus sp. Strain KSM-K38 (AmyK38) and Its Sodium Ion Binding Sites

scientific article (publication date: 4 July 2003)

Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites,

scientific article published on September 30, 2003

Crystal Structure of Heterodimeric Hexaprenyl Diphosphate Synthase from Micrococcus luteus B-P 26 Reveals That the Small Subunit Is Directly Involved in the Product Chain Length Regulation

scientific article published on November 9, 2010

Crystal Structures ofN-Acetylglucosamine-phosphate Mutase, a Member of the α-d-Phosphohexomutase Superfamily, and Its Substrate and Product Complexes

scientific article published in Journal of Biological Chemistry

Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass.

scientific article published on 16 March 2018

Crystal structure of 3-hexulose-6-phosphate synthase, a member of the orotidine 5'-monophosphate decarboxylase suprafamily

scientific article

Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation

scientific article

Crystal structure of N-acylamino acid racemase from Thermus thermophilus HB8

scientific article

Crystal structure of PH1733, an aspartate racemase homologue, from Pyrococcus horikoshii OT3

scientific article

Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A resolution

scientific article

Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1

scientific article

Crystal structure of a periplasmic substrate-binding protein in complex with calcium lactate

scientific article

Crystal structure of a symbiosis-related lectin from octocoral

scientific article

Crystal structure of a thermophilic GrpE protein: insight into thermosensing function for the DnaK chaperone system

scientific article

Crystal structure of archaeal ketopantoate reductase complexed with coenzyme a and 2-oxopantoate provides structural insights into feedback regulation

scientific article

Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: implication of a novel light-harvesting cofactor.

scientific article published on 7 October 2006

Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization

scientific article

Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.

scientific article

Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus

scientific article published on 01 May 2005

Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif

scientific article

Crystal structure of heme A synthase from

article published in the Proceedings of the National Academy of Sciences of the United States of America

Crystal structure of human cyclophilin D in complex with its inhibitor, cyclosporin A at 0.96-A resolution

scientific article

Crystal structure of human pirin: an iron-binding nuclear protein and transcription cofactor

scientific article

Crystal structure of ketopantoate reductase from Thermococcus kodakarensis complexed with NADP(.).

scientific article published on 22 April 2016

Crystal structure of octocoral lectin SLL-2 complexed with Forssman antigen tetrasaccharide.

scientific article published on 16 May 2017

Crystal structure of pantoate kinase from Thermococcus kodakarensis

scientific article published on 20 November 2019

Crystal structure of phenylacetic acid degradation protein PaaG from Thermus thermophilus HB8

scientific article

Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis

scientific article

Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa).

scientific article published in December 2005

Crystal structure of stilbene synthase from Arachis hypogaea.

scientific article published in September 2005

Crystal structure of the (R)-specific enoyl-CoA hydratase from Aeromonas caviae involved in polyhydroxyalkanoate biosynthesis

scientific article

Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2alpha.

scientific article

Crystal structure of the Co-chaperonin Cpn10 from Thermus thermophilus HB8.

scientific article

Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase

scientific article published on 23 May 2016

Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA

scientific article

Crystal structure of the complex between calyculin A and the catalytic subunit of protein phosphatase 1

scientific article

Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p

scientific article

Crystal structure of the electron carrier domain of the reaction center cytochrome c(z) subunit from green photosynthetic bacterium Chlorobium tepidum

scientific article

Crystal structure of the flavin reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8: Structural basis for the flavin affinity

scientific article

Crystal structure of the oxygenase component (HpaB) of the 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8

scientific article

Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8

scientific article published on 01 December 2005

Crystal structure of the stationary phase survival protein SurE with metal ion and AMP

scientific article

Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans and catalytic reaction mechanism

scientific article

Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: insights into cyanation reaction by thiol redox signaling

scientific article

Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA

scientific article published on 18 June 2018

Crystal structures of an archaeal chitinase ChiD and its ligand complexes

scientific article published on 01 June 2018

Crystal structures of bacterial lipoprotein localization factors, LolA and LolB

scientific article

Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1

scientific article

Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation

scientific article

Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation

scientific article

Crystal structures of the group II chaperonin from Thermococcus strain KS-1: steric hindrance by the substituted amino acid, and inter-subunit rearrangement between two crystal forms

scientific article

Crystallization And Preliminary X-Ray Studies Of A Thermostable Dna Photolyase From Thermus Thermophilus Hb8

Crystallization and heavy-atom derivatization of StHsp14.0, a small heat-shock protein from Sulfolobus tokodaii

scientific article published on 23 September 2009

Crystallization and preliminary X-ray analysis of the oxygenase component (HpaB) of 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8.

scientific article published on 11 June 2007

Crystallization and preliminary X-ray analysis of the small component of 4-hydroxyphenylacetate 3-monooxygenase (HpaC) and its cofactor complex from Thermus thermophilus HB8.

scientific article

Crystallization and preliminary X-ray characterization of archaeal group II chaperonin α-subunit fromThermococcusstrain KS-1

scientific article published on 28 September 2002

Crystallization and preliminary X-ray crystallographic analysis of extracellular giant hemoglobin from pogonophoran Oligobrachia mashikoi

scientific article published in June 2005

Crystallization and preliminary X-ray crystallographic studies of the [NiFe] hydrogenase maturation proteins HypC and HypD

scientific article published on 31 May 2007

Crystallization and preliminary X-ray crystallographic studies of the oxidative-stress sensor SoxR and its complex with DNA.

scientific article

Crystallization and preliminary X-ray crystallographic studies of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8.

scientific article published on 25 February 2004

Crystallization and preliminary X-ray crystallographic study of [NiFe]-hydrogenase maturation factor HypE from Thermococcus kodakaraensis KOD1.

scientific article published on 25 August 2007

Crystallization and preliminary crystallographic study of the outer-membrane lipoprotein receptor LolB, a member of the lipoprotein localization factors

scientific article

Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 Å resolution.

scientific article

DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction

scientific article

Detailed assessment of X-ray induced structural perturbation in a crystalline state protein

scientific article

Development of a fully automated macromolecular crystallization/observation robotic system, HTS-80.

scientific article published on 26 May 2005

Development of a novel ampholyte buffer for isoelectric focusing: electric charge-separation of protein samples for X-ray crystallography using free-flow isoelectric focusing

scientific article published on 26 May 2005

Development of beam line X-ray crystallography targeting multiprotein complexes: Overview

scientific article published on 01 September 2009

Differential analysis of D-beta-Asp-containing proteins found in normal and infrared irradiated rabbit lens.

scientific article

Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0

scientific article

Distribution of valence electrons of the flavin cofactor in NADH-cytochrome b5 reductase.

scientific article published on 22 February 2017

Dynamic, Ligand-dependent Conformational Change Triggers Reaction of Ribose-1,5-bisphosphate Isomerase from Thermococcus kodakarensis KOD1

scientific article

Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer

scientific article

Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway

scientific article published on 12 October 2012

Expression and purification of F-plasmid RepE and preliminary X-ray crystallographic study of its complex with operator DNA.

scientific article published on 30 March 2007

Expression, purification, crystallization and X-ray diffraction studies of the molecular chaperone prefoldin from Homo sapiens

scientific article published on 25 August 2015

Fate determination of the flavin photoreceptions in the cyanobacterial blue light receptor TePixD (Tll0078).

scientific article published on 4 August 2006

Identification and structure of a novel archaeal HypB for [NiFe] hydrogenase maturation

scientific article

Identification of a pyrophosphate-dependent kinase and its donor selectivity determinants.

scientific article

Improved expression, purification and crystallization of a putative N-acetyl-gamma-glutamyl-phosphate reductase from rice (Oryza sativa)

scientific article

Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase

scientific article

Introduction of a lethal redox switch that controls the opening and closing of the hydrophobic cavity in LolA.

scientific article

Involvement of tyrosines at fucose-binding sites of Aleuria aurantia lectin: non-equal response to site-directed mutagenesis among five sites

scientific article published in April 2004

Monomer-dimer transition of the conserved N-terminal domain of the mammalian peroxisomal matrix protein import receptor, Pex14p

scientific article published on 01 March 2010

Mutation design of a thermophilic Rubisco based on three-dimensional structure enhances its activity at ambient temperature

scientific article published on 6 June 2016

Mutational analysis of allylic substrate binding site of Micrococcus luteus B-P 26 undecaprenyl diphosphate synthase

scientific article published in April 2003

Nonequivalence observed for the 16-meric structure of a small heat shock protein, SpHsp16.0, from Schizosaccharomyces pombe

scientific article

Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release

scientific article

Origin of asymmetry at the intersubunit interfaces of V1-ATPase from Thermus thermophilus

scientific article

Overexpression, characterization, and crystallization of the functional domain of cytochrome c(z) from Chlorobium tepidum

scientific article published in October 2009

Protein higher-order structure formation system

scientific article published in April 2008

Purification, characterization and crystallization of the core complex from thermophilic purple sulfur bacterium Thermochromatium tepidum

scientific article published on 16 June 2007

Purification, crystallization and preliminary X-ray crystallographic analysis of the outer membrane lipoprotein NlpE from Escherichia coli

scientific article

Purification, crystallization and preliminary X-ray diffraction studies of N-acetylglucosamine-phosphate mutase from Candida albicans

scientific article

Purification, crystallization and preliminary X-ray diffraction studies of UDP-N-acetylglucosamine pyrophosphorylase from Candida albicans

scientific article

Revisiting the concept of peptide bond planarity in an iron-sulfur protein by neutron structure analysis

scientific article published on 20 May 2022

Roles of conserved basic amino acid residues and activation mechanism of the hyperthermophilic aspartate racemase at high temperature

scientific article published on 01 August 2006

Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membrane

scientific article

Significance of highly conserved aromatic residues in Micrococcus luteus B-P 26 undecaprenyl diphosphate synthase

scientific article published in December 2003

Structural Insight into [NiFe] Hydrogenase Maturation by Transient Complexes between Hyp Proteins

scientific article published on 31 March 2020

Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis.

scientific article published on 30 March 2017

Structural and functional characterisation of the cyanobacterial PetC3 Rieske protein family

scientific article

Structural and functional studies on the tetraheme cytochrome subunit and its electron donor proteins: the possible docking mechanisms during the electron transfer reaction

scientific article

Structural and molecular characterization of the prefoldin beta subunit from Thermococcus strain KS-1

scientific article

Structural basis for regulation of bifunctional roles in replication initiator protein

scientific article

Structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin

scientific article

Structural basis of [NiFe] hydrogenase maturation by Hyp proteins.

scientific article published on 08 September 2012

Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer

scientific article published on 8 June 2015

Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation

scientific article

Structural features of isomerizable aspartyl residues in human α-crystallins

scientific article

Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases

scientific article

Structural studies of the Cpx pathway activator NlpE on the outer membrane of Escherichia coli

scientific article

Structural studies of the N-terminal fragments of the WW domain: Insights into co-translational folding of a beta-sheet protein

scientific article

Structural studies of the carbon monoxide complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: suggestion for the initial activation site for dihydrogen

scientific article

Structural studies on the oligomeric transition of a small heat shock protein, StHsp14.0

scientific article

Structure analysis and comparative characterization of the cytochrome c' and flavocytochrome c from thermophilic purple photosynthetic bacterium Thermochromatium tepidum

scientific article

Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization

scientific article

Structure and molecular dynamics simulation of archaeal prefoldin: the molecular mechanism for binding and recognition of nonnative substrate proteins

scientific article

Structure and mutation analysis of archaeal geranylgeranyl reductase

scientific article

Structure of a [NiFe] hydrogenase maturation protease HycI provides insights into its substrate selectivity.

scientific article published on 8 March 2018

Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain

scientific article published on 9 April 2005

Structure of a thermophilic cyanobacterial b6f-type Rieske protein

scientific article

Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi

scientific article

Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 A resolution

scientific article

Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 Å

scientific article

Structure of the [NiFe]-hydrogenase maturation protein HypF fromThermococcus kodakarensisKOD1

scientific article

Structure of the partially unliganded met state of 400 kDa hemoglobin: insights into ligand-induced structural changes of giant hemoglobins

scientific article

Structure-based Catalytic Optimization of a Type III Rubisco from a Hyperthermophile

scientific article published on October 6, 2010

Subatomic resolution X-ray structures of green fluorescent protein

scientific article published on 03 April 2019

Substrate Distortion Contributes to the Catalysis of Orotidine 5′-Monophosphate Decarboxylase

scientific article

The Molecular Structure of a Schiff Base Complex, [N,N′-Ethylenebis(1-phenyl-2-imino-1-butanonato)](acetonitrile)manganese(III) Perchlorate

The N-terminal domain of the replication initiator protein RepE is a dimerization domain forming a stable dimer

scientific article published in February 2004

The crystal structure of an oxidatively stable subtilisin-like alkaline serine protease, KP-43, with a C-terminal beta-barrel domain

scientific article

The crystal structure of polyhydroxybutyrate depolymerase from Penicillium funiculosum provides insights into the recognition and degradation of biopolyesters.

scientific article published on 27 December 2005

The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins

scientific article

Ultra-high-resolution structure and charge-density analysis of high-potential iron-sulfur protein.

scientific article

Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum

scientific article

X-ray crystallographic characterization and phasing of a fucose-specific lectin from Aleuria aurantia

scientific article published on 23 January 2003

X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-ångström resolutions

scientific article published on 19 November 2019

X-ray structure analysis of bacteriorhodopsin at 1.3 Å resolution

scientific article published in Scientific Reports

[An exhaustive overproduction of bacterial proteins]

scientific article published on 01 June 2002

[Bacterial photosynthetic unit: light-harvesting and reaction center complexes]

scientific article published on 01 August 2005

[Development of automatic crystal mounting system commonly utilizable for SPring-8 and photon factory]

scientific article published on 01 September 2009

[Structural genomics/proteomics in Japanese university community]

scientific article published on 01 June 2002