List of works - Jan Traas

A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data

scientific article published on 20 May 2022

A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution

scientific article (publication date: 2015)

A correlative microscopy approach relates microtubule behaviour, local organ geometry, and cell growth at the Arabidopsis shoot apical meristem

scientific article

A data-driven integrative model of sepal primordium polarity in Arabidopsis

scientific article (publication date: December 2011)

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

scientific article published on 15 January 2012

A protocol to analyse cellular dynamics during plant development.

scientific article published in December 2005

Alignment between PIN1 polarity and microtubule orientation in the shoot apical meristem reveals a tight coupling between morphogenesis and auxin transport

scientific article (publication date: 2010)

An auxin-mediated shift toward growth isotropy promotes organ formation at the shoot meristem in Arabidopsis

scientific article

Auxin at the shoot apical meristem

scientific article

COP1 mediates the coordination of root and shoot growth by light through modulation of PIN1- and PIN2-dependent auxin transport in Arabidopsis

scientific article

Cell differentiation and organ initiation at the shoot apical meristem

scientific article

Cell numbers and leaf development in Arabidopsis: a functional analysis of the STRUWWELPETER gene.

scientific article

Cell proliferation patterns at the shoot apical meristem

scientific article

Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size

scientific article

Cellular Heterogeneity in Pressure and Growth Emerges from Tissue Topology and Geometry

scientific article published on 12 March 2020

Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis

scientific article

Cyclin-dependent kinase activity maintains the shoot apical meristem cells in an undifferentiated state

scientific article

Cytokinin signalling inhibitory fields provide robustness to phyllotaxis

scientific article

Developmental patterning by mechanical signals in Arabidopsis

scientific article

Evidence for the Regulation of Gynoecium Morphogenesis by ETTIN via Cell Wall Dynamics

scientific article published on 20 September 2018

Expression patterns of TEL genes in Poaceae suggest a conserved association with cell differentiation

scientific article published on 18 April 2005

Floral stem cell termination involves the direct regulation of AGAMOUS by PERIANTHIA.

scientific article published in May 2009

Flower development: from morphodynamics to morphomechanics.

scientific article

Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development

scientific article

Force-Driven Polymerization and Turgor-Induced Wall Expansion.

scientific article published on 16 February 2016

From genes to shape: understanding the control of morphogenesis at the shoot meristem in higher plants using systems biology

scientific article

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

scientific article

In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in Arabidopsis.

scientific article published on 11 December 2003

Integrating physical stress, growth, and development

scientific article

In vivo analysis of local wall stiffness at the shoot apical meristem in Arabidopsis using atomic force microscopy.

scientific article

Is cell polarity under mechanical control in plants? ⬇️

scientific article published on January 1, 2011

KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation

scientific article

MGOUN3, an Arabidopsis gene with TetratricoPeptide-Repeat-related motifs, regulates meristem cellular organization

scientific article

Mechanical signaling in plant morphogenesis

scientific article published on 01 May 2018

Mechanical stress acts via katanin to amplify differences in growth rate between adjacent cells in Arabidopsis

scientific article

Mechanical stress contributes to the expression of the STM homeobox gene in Arabidopsis shoot meristems

scientific article

MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems

scientific article

Microtubule-Mediated Wall Anisotropy Contributes to Leaf Blade Flattening

scientific article published on 09 September 2020

Modeling as a tool for analysis in developmental biology

scientific article published in October 2006

Molecular Networks Regulating Meristem Homeostasis

scientific article published on 23 June 2018

New insights in shoot apical meristem morphogenesis: Isotropy comes into play.

scientific article

Normal differentiation patterns in plants lacking microtubular preprophase bands

scientific article published in Nature

Organogenesis at the Shoot Apical Meristem

article

PIN-FORMED1 and PINOID regulate boundary formation and cotyledon development in Arabidopsis embryogenesis

scientific article published on 15 September 2004

Phyllotaxis

scientific article

Physical models of plant development.

scientific article published on 18 June 2014

Plant Development: From Dynamics to Mechanics

scientific article published in April 2017

Plant development: from biochemistry to biophysics and back

scientific article published on 01 March 2014

Plant science. Oscillating roots

scientific article

Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis

scientific article

Regulation of phyllotaxis by polar auxin transport

scientific article

Regulation of plant cell wall stiffness by mechanical stress: a mesoscale physical model

article

Regulation of shape and patterning in plant development

scientific article

Reproductive Meristem22 is a unique marker for the early stages of stamen development

scientific article

Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the apical region of the Arabidopsis embryo.

scientific article

Separable roles of UFO during floral development revealed by conditional restoration of gene function.

scientific article

Simulating Turgor-Induced Stress Patterns in Multilayered Plant Tissues

scientific article published on 11 June 2019

Systems Analysis of Shoot Apical Meristem Growth and Development: Integrating Hormonal and Mechanical Signaling ⬇️

scientific article published on October 30, 2012

Systems biology of organ initiation at the shoot apex

scientific article

The Flux-Based PIN Allocation Mechanism Can Generate Either Canalyzed or Diffuse Distribution Patterns Depending on Geometry and Boundary Conditions ⬇️

scientific article published on January 28, 2013

The KNAT2 homeodomain protein interacts with ethylene and cytokinin signaling ⬇️

scientific article

The Mechanical Feedback Theory of Leaf Lamina Formation

scientific article published on 27 November 2020

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

scientific article

The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth

scientific article

The ethanol switch: a tool for tissue-specific gene induction during plant development.

scientific article published in December 2003

The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence

scientific article

The mechanics behind plant development

scientific article

The plasma membrane recycling pathway and cell polarity in plants: studies on PIN proteins.

scientific article published on 7 March 2006

The shoot apical meristem: the dynamics of a stable structure

scientific article

Transcriptional induction of cell wall remodelling genes is coupled to microtubule-driven growth isotropy at the shoot apex inArabidopsis ⬇️

article

Turning a plant tissue into a living cell froth through isotropic growth

scientific article

When biochemistry meets mechanics: a systems view of growth control in plants

scientific article

Whole-Mount In Situ Hybridization of RNA Probes to Plant Tissues ⬇️

scientific article published on 01 February 2008

Xyloglucans and Microtubules Synergistically Maintain Meristem Geometry and Phyllotaxis

scientific article published on 19 September 2019

ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize

scientific article

List of works by Jan Traas

A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data

A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution

A correlative microscopy approach relates microtubule behaviour, local organ geometry, and cell growth at the Arabidopsis shoot apical meristem

A data-driven integrative model of sepal primordium polarity in Arabidopsis

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

A protocol to analyse cellular dynamics during plant development.

Alignment between PIN1 polarity and microtubule orientation in the shoot apical meristem reveals a tight coupling between morphogenesis and auxin transport

An auxin-mediated shift toward growth isotropy promotes organ formation at the shoot meristem in Arabidopsis

Auxin at the shoot apical meristem

COP1 mediates the coordination of root and shoot growth by light through modulation of PIN1- and PIN2-dependent auxin transport in Arabidopsis

Cell differentiation and organ initiation at the shoot apical meristem

Cell numbers and leaf development in Arabidopsis: a functional analysis of the STRUWWELPETER gene.

Cell proliferation patterns at the shoot apical meristem

Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size

Cellular Heterogeneity in Pressure and Growth Emerges from Tissue Topology and Geometry

Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis

Cyclin-dependent kinase activity maintains the shoot apical meristem cells in an undifferentiated state

Cytokinin signalling inhibitory fields provide robustness to phyllotaxis

Developmental patterning by mechanical signals in Arabidopsis

Evidence for the Regulation of Gynoecium Morphogenesis by ETTIN via Cell Wall Dynamics

Expression patterns of TEL genes in Poaceae suggest a conserved association with cell differentiation

Floral stem cell termination involves the direct regulation of AGAMOUS by PERIANTHIA.

Flower development: from morphodynamics to morphomechanics.

Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development

Force-Driven Polymerization and Turgor-Induced Wall Expansion.

From genes to shape: understanding the control of morphogenesis at the shoot meristem in higher plants using systems biology

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in Arabidopsis.

Integrating physical stress, growth, and development

In vivo analysis of local wall stiffness at the shoot apical meristem in Arabidopsis using atomic force microscopy.

Is cell polarity under mechanical control in plants? ⬇️

KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation

MGOUN3, an Arabidopsis gene with TetratricoPeptide-Repeat-related motifs, regulates meristem cellular organization

Mechanical signaling in plant morphogenesis

Mechanical stress acts via katanin to amplify differences in growth rate between adjacent cells in Arabidopsis

Mechanical stress contributes to the expression of the STM homeobox gene in Arabidopsis shoot meristems

MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems

Microtubule-Mediated Wall Anisotropy Contributes to Leaf Blade Flattening

Modeling as a tool for analysis in developmental biology

Molecular Networks Regulating Meristem Homeostasis

New insights in shoot apical meristem morphogenesis: Isotropy comes into play.

Normal differentiation patterns in plants lacking microtubular preprophase bands

Organogenesis at the Shoot Apical Meristem

PIN-FORMED1 and PINOID regulate boundary formation and cotyledon development in Arabidopsis embryogenesis

Phyllotaxis

Physical models of plant development.

Plant Development: From Dynamics to Mechanics

Plant development: from biochemistry to biophysics and back

Plant science. Oscillating roots

Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis

Regulation of phyllotaxis by polar auxin transport

Regulation of plant cell wall stiffness by mechanical stress: a mesoscale physical model

Regulation of shape and patterning in plant development

Reproductive Meristem22 is a unique marker for the early stages of stamen development

Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the apical region of the Arabidopsis embryo.

Separable roles of UFO during floral development revealed by conditional restoration of gene function.

Simulating Turgor-Induced Stress Patterns in Multilayered Plant Tissues

Systems Analysis of Shoot Apical Meristem Growth and Development: Integrating Hormonal and Mechanical Signaling ⬇️

Systems biology of organ initiation at the shoot apex

The Flux-Based PIN Allocation Mechanism Can Generate Either Canalyzed or Diffuse Distribution Patterns Depending on Geometry and Boundary Conditions ⬇️

The KNAT2 homeodomain protein interacts with ethylene and cytokinin signaling ⬇️

The Mechanical Feedback Theory of Leaf Lamina Formation

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth

The ethanol switch: a tool for tissue-specific gene induction during plant development.

The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence

The mechanics behind plant development

The plasma membrane recycling pathway and cell polarity in plants: studies on PIN proteins.

The shoot apical meristem: the dynamics of a stable structure

Transcriptional induction of cell wall remodelling genes is coupled to microtubule-driven growth isotropy at the shoot apex inArabidopsis ⬇️

Turning a plant tissue into a living cell froth through isotropic growth

When biochemistry meets mechanics: a systems view of growth control in plants

Whole-Mount In Situ Hybridization of RNA Probes to Plant Tissues ⬇️

Xyloglucans and Microtubules Synergistically Maintain Meristem Geometry and Phyllotaxis

ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize