List of works by Jean-Christophe Olivo-Marin

3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy.

scientific article published on 30 December 2010

4D live imaging and computational modeling of a functional gut-on-a-chip evaluate how peristalsis facilitates enteric pathogen invasion

scientific article published in 2022

A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation

scientific article published on February 2002

A dual role for actin and microtubule cytoskeleton in the transport of Golgi units from the nurse cells to the oocyte across ring canals

scientific article

A fast and automated framework for extraction of nuclei from cluttered 3D images in fluorescence microscopy

article published in 2011

A role for septin 2 in Drp1-mediated mitochondrial fission

scientific article published on 23 May 2016

A statistical analysis of spatial clustering along cell filaments using Ripley's K function

A versatile system for the neuronal subtype specific expression of lentiviral vectors

scientific article published on 26 October 2009

Absence of Fungal Spore Internalization by Bronchial Epithelium in Mouse Models Evidenced by a New Bioimaging Approach and Transmission Electronic Microscopy

scientific article

ActA promotes Listeria monocytogenes aggregation, intestinal colonization and carriage

scientific article

Activation of human gonadotropin-releasing hormone receptor promotes down regulation of ARHGAP18 and regulates the cell invasion of MDA-MB-231 cells

scientific article

Acute stress in adulthood impoverishes social choices and triggers aggressiveness in preclinical models.

scientific article

Amoeboid movement in protozoan pathogens

scientific article published on 09 October 2015

An objective comparison of cell-tracking algorithms.

scientific article published on 30 October 2017

An open data ecosystem for cell migration research

scientific article

An unbiased risk estimator for image denoising in the presence of mixed poisson-gaussian noise

scientific article published in March 2014

Analysis of the spatial organization of molecules with robust statistics

scientific article

Anisotropic organization of circumferential actomyosin characterizes hematopoietic stem cells emergence in the zebrafish

scientific article published on 22 August 2018

AutomiG, a biosensor to detect alterations in miRNA biogenesis and in small RNA silencing guided by perfect target complementarity

scientific article (publication date: 2013)

Bayesian estimation for optimized structured illumination microscopy

scientific article

BioFlow: a non-invasive, image-based method to measure speed, pressure and forces inside living cells

scientific article published on 23 August 2017

Biological video reconstruction using linear or non-linear Fourier measurements

Blind deconvolution for thin-layered confocal imaging

scientific article

Cellular and behavioral effects of cranial irradiation of the subventricular zone in adult mice.

scientific article

Cerebral microcirculation shear stress levels determine Neisseria meningitidis attachment sites along the blood-brain barrier

scientific article

Cerebral microcirculation shear stress levels determineNeisseria meningitidisattachment sites along the blood–brain barrier

Characterizing the 3-D field distortions in low numerical aperture fluorescence zooming microscope

scientific article

Combining local filtering and multiscale analysis for edge, ridge, and curvilinear objects detection

scientific article

Comparison of reconstruction algorithms in compressed sensing applied to biological imaging

Compressed sensing applications for biological microscopy

article published in 2010

Compressed sensing in biological microscopy

Compressed sensing with off-axis frequency-shifting holography

scientific article (publication date: 15 March 2010)

Computerized video analysis of social interactions in mice.

scientific article published on 4 March 2012

Correction

scholarly article published in Journal of Cell Biology

Cortactin and Crk cooperate to trigger actin polymerization during Shigella invasion of epithelial cells

scientific article

Crosstalk between Entamoeba histolytica and the human intestinal tract during amoebiasis

scientific article published on 7 December 2017

Curvelet analysis of kymograph for tracking bi-directional particles in fluorescence microscopy images

Deciphering tissue morphodynamics using bioimage informatics.

scientific article published on May 2017

Denoising in fluorescence microscopy using compressed sensing with multiple reconstructions and non-local merging

scientific article published in January 2010

Disruption of Adult Neurogenesis in the Olfactory Bulb Affects Social Interaction but not Maternal Behavior

scientific article

E-cadherin focuses protrusion formation at the front of migrating cells by impeding actin flow

scientific article published on 26 October 2020

Early sequence of events triggered by the interaction of Neisseria meningitidis with endothelial cells.

scientific article published on 27 December 2013

EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis

scientific article published on 01 January 2003

Escape of HIV-1-infected dendritic cells from TRAIL-mediated NK cell cytotoxicity during NK-DC cross-talk--a pivotal role of HMGB1.

scientific article

Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart.

scientific article published on 21 January 2013

Ezrin tunes T-cell activation by controlling Dlg1 and microtubule positioning at the immunological synapse.

scientific article

Fluid dynamics during bleb formation in migrating cells in vivo

From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee

scientific article published in June 2023

Gaussian approximations of fluorescence microscope point-spread function models

scientific article

High-resolution statistical mapping reveals gene territories in live yeast

scientific article published on 2 November 2008

Human Liver Infection in a Dish: Easy-To-Build 3D Liver Models for Studying Microbial Infection

scientific article published on 10 February 2016

Human MxA protein participates to the interferon-related inhibition of hepatitis B virus replication in female transgenic mice

scientific article

Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica

scientific article published on February 2006

Icy: an open bioimage informatics platform for extended reproducible research.

scientific article

Image denoising by adaptive Compressed Sensing reconstructions and fusions

article

Image denoising by multiple compressed sensing reconstructions

article

Imaging intraflagellar transport in trypanosomes

scientific article published on 07 March 2015

Imaging movement of malaria parasites during transmission by Anopheles mosquitoes.

scientific article published in July 2004

Imaging tissue-mimic with light sheet microscopy: A comparative guideline

scientific article

Imagining the future of bioimage analysis

scientific article published on December 2016

In vivo colocalisation of oskar mRNA and trans-acting proteins revealed by quantitative imaging of the Drosophila oocyte

scientific article

Intracellular traffic of the lysine and glutamic acid rich protein KERP1 reveals features of endomembrane organization in Entamoeba histolytica.

scientific article published on 9 February 2016

Intraflagellar transport proteins cycle between the flagellum and its base

scientific article

Learning and survival of newly generated neurons: when time matters.

scientific article

Legionella pneumophila Modulates Mitochondrial Dynamics to Trigger Metabolic Repurposing of Infected Macrophages

scientific article

Mapping molecular assemblies with fluorescence microscopy and object-based spatial statistics.

scientific article published on 15 February 2018

Membrane protrusion powers clathrin-independent endocytosis of interleukin-2 receptor

scientific article published on 29 June 2015

Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation

scientific article

Modulation of the mouse prefrontal cortex activation by neuronal nicotinic receptors during novelty exploration but not by exploration of a familiar environment

scientific article published in August 2011

Morphodynamics of the Actin-Rich Cytoskeleton in Entamoeba histolytica.

scientific article published on 29 May 2018

Multiple Hypothesis Tracking for Cluttered Biological Image Sequences

scientific article

Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots

scientific article published on May 2006

Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica

scientific article

Neonatal and adult neurogenesis provide two distinct populations of newborn neurons to the mouse olfactory bulb.

scientific article published in July 2005

New computerized color image analysis for the quantification of interstitial fibrosis in renal transplantation.

scientific article

Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast.

scientific article

Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing

Numerical evaluation of subsampling effects on image reconstruction in compressed sensing microscopy

Objective comparison of particle tracking methods

scientific article

Off-axis compressed holographic microscopy in low-light conditions

scientific article (publication date: 2011)

Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb.

scientific article published in October 2006

Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis

scientific article

Parametric blind deconvolution for confocal laser scanning microscopy

scientific article

Phase retrieval with sparsity priors and application to microscopy video reconstruction

Prefrontal nicotinic receptors control novel social interaction between mice.

scientific article

Prions hijack tunnelling nanotubes for intercellular spread

scientific article

Quantification of interstitial fibrosis by image analysis on routine renal biopsy in patients receiving cyclosporine

scientific article published in December 2007

Quantitative analysis of polarity in 3D reveals local cell coordination in the embryonic mouse heart.

scientific article published in January 2013

Quantitative and Statistical Study of the Dynamics of Clathrin-Dependent and -Independent Endocytosis Reveal a Differential Role of EndophilinA2.

scientific article published in February 2018

Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes

scientific article published in October 2006

Real-time analysis of the behaviour of groups of mice via a depth-sensing camera and machine learning

scientific article published on 20 May 2019

Recent approaches of quantification of interstitial fibrosis in renal transplantation

scientific article published in November 2009

Recording Mouse Ultrasonic Vocalizations to Evaluate Social Communication

scientific article

Reducing data acquisition for fast Structured Illumination Microscopy using Compressed Sensing

Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution

scientific article

SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope

scientific article

Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing

scientific article published in October 2002

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces.

scientific article published in September 2005

Shigella effector IpaB-induced cholesterol relocation disrupts the Golgi complex and recycling network to inhibit host cell secretion

scientific article

Social communication in mice--are there optimal cage conditions?

scientific article

Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples

Special issue on whole slide microscopic image processing

scientific article published on 12 July 2011

Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences

scientific article published in January 2011

Statistical analysis of molecule colocalization in bioimaging

scientific article

Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region

scientific article

The adaptor-associated kinase 1, AAK1, is a positive regulator of the Notch pathway

scientific article

The metabotropic glutamate receptor mGluR5 is endocytosed by a clathrin-independent pathway.

scientific article published on 15 January 2003

The motility of Entamoeba histolytica: finding ways to understand intestinal amoebiasis

scientific article

The signalling factor PI3K is a specific regulator of the clathrin-independent dynamin-dependent endocytosis of IL-2 receptors

scientific article published on 23 January 2013

Tracking algorithms chase down pathogens.

scientific article published on June 2009

Tracking fluroescent spots in biological video microscopy

Tunneling nanotubes spread fibrillar α-synuclein by intercellular trafficking of lysosomes

scientific article published on 22 August 2016

Urinary procollagen III aminoterminal propeptide (PIIINP): a fibrotest for the nephrologist.

scientific article

Urinary retinol binding protein is a marker of the extent of interstitial kidney fibrosis

scientific article published on 08 January 2014

Using steerable wavelets and minimal paths to reconstruct automatically filaments in fluorescence imaging

Video reconstruction using compressed sensing measurements and 3d total variation regularization for bio-imaging applications

WAFL, a new protein involved in regulation of early endocytic transport at the intersection of actin and microtubule dynamics

scientific article

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